Variant report

Variant	rs57205845
Chromosome Location	chr15:34351897-34351898
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34351759..34355755-chr15:34876768..34880095,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11853879	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11857881	0.82[ASN][1000 genomes]
rs1436923	0.81[ASN][1000 genomes]
rs16958770	0.85[ASN][1000 genomes]
rs1865925	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2568532	0.85[ASN][1000 genomes]
rs2576308	0.85[ASN][1000 genomes]
rs2576310	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28376576	0.80[ASN][1000 genomes]
rs3794593	0.85[ASN][1000 genomes]
rs4780214	0.80[ASN][1000 genomes]
rs4780215	0.80[ASN][1000 genomes]
rs4780216	0.80[ASN][1000 genomes]
rs522397	0.96[ASN][1000 genomes]
rs56310728	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58152986	0.93[ASN][1000 genomes]
rs623941	0.95[ASN][1000 genomes]
rs6495519	0.85[ASN][1000 genomes]
rs7161835	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7182085	0.80[ASN][1000 genomes]
rs721122	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73374335	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8028703	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34349000-34353800	Weak transcription	HSMM	muscle
2	chr15:34349000-34358000	Weak transcription	Aorta	Aorta
3	chr15:34349200-34354000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:34349200-34357000	Weak transcription	NHEK	skin
5	chr15:34349400-34354000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:34349400-34357000	Weak transcription	HMEC	breast
7	chr15:34349400-34358000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:34350000-34353800	Weak transcription	Osteobl	bone
9	chr15:34350000-34354000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:34351600-34352000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr15:34351800-34352200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:34351800-34352200	Enhancers	Placenta	Placenta

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