Variant report

Variant	rs58152986
Chromosome Location	chr15:34336378-34336379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:34329343..34331465-chr15:34336277..34339020,2	MCF-7	breast:
2	chr15:34330617..34332262-chr15:34336071..34337921,2	K562	blood:
3	chr15:34334263..34336423-chr15:34338264..34339840,2	K562	blood:
4	chr15:34332870..34334555-chr15:34335095..34337616,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169857	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10519901	0.89[EUR][1000 genomes]
rs11853879	0.86[ASN][1000 genomes]
rs11857881	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16954025	0.86[EUR][1000 genomes]
rs16958529	0.91[EUR][1000 genomes]
rs16958535	0.91[EUR][1000 genomes]
rs1872807	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2568539	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2576310	0.83[ASN][1000 genomes]
rs28510508	0.94[EUR][1000 genomes]
rs28562640	0.94[EUR][1000 genomes]
rs3928443	0.91[EUR][1000 genomes]
rs522397	0.89[ASN][1000 genomes]
rs57074162	0.91[EUR][1000 genomes]
rs57205845	0.93[ASN][1000 genomes]
rs61134341	0.91[EUR][1000 genomes]
rs623941	0.88[ASN][1000 genomes]
rs7161835	0.81[ASN][1000 genomes]
rs73374335	0.80[ASN][1000 genomes]
rs73387915	0.91[EUR][1000 genomes]
rs73387940	0.94[EUR][1000 genomes]
rs8026782	0.95[EUR][1000 genomes]
rs8033305	0.94[EUR][1000 genomes]
rs8033306	0.94[EUR][1000 genomes]
rs9806373	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34332000-34339000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:34332200-34337400	Weak transcription	HSMM	muscle
3	chr15:34332200-34339400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:34332400-34337400	Weak transcription	HSMMtube	muscle
5	chr15:34332400-34337600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:34332400-34337600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:34332400-34338000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:34332600-34337600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:34335600-34336400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:34335600-34336400	Enhancers	NH-A	brain
11	chr15:34335600-34336400	Enhancers	Osteobl	bone
12	chr15:34335800-34336400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:34335800-34336400	Enhancers	HepG2	liver

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