Variant report

Variant	rs9806373
Chromosome Location	chr15:34307957-34307958
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10519901	0.94[EUR][1000 genomes]
rs11857881	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16954025	0.81[TSI][hapmap];0.91[EUR][1000 genomes]
rs16958529	0.95[EUR][1000 genomes]
rs16958535	1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1872807	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2568539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28510508	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28562640	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3928443	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs532720	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs57074162	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58152986	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61134341	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73387915	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73387940	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8026782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8033305	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8033306	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34265400-34311800	Weak transcription	Liver	Liver
2	chr15:34274400-34311000	Weak transcription	Primary B cells from cord blood	blood
3	chr15:34278200-34310000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:34292000-34315000	Weak transcription	Aorta	Aorta
5	chr15:34294800-34315600	Weak transcription	Left Ventricle	heart
6	chr15:34302200-34311200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:34304200-34319800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:34304800-34310400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:34305000-34314000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:34306600-34314400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:34307000-34310200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:34307000-34311200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:34307400-34308000	Weak transcription	HSMMtube	muscle
14	chr15:34307400-34308600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:34307600-34309000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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