Variant report

Variant	rs8026782
Chromosome Location	chr15:34314923-34314924
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34314534..34316475-chr15:34330485..34333173,2	MCF-7	breast:
2	chr15:34314027..34315859-chr15:34326232..34328519,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169857	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10519901	0.94[EUR][1000 genomes]
rs11857881	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16954025	0.91[EUR][1000 genomes]
rs16958529	0.95[EUR][1000 genomes]
rs16958535	1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1872807	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2568539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28510508	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28562640	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3928443	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs532720	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs57074162	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58152986	0.95[EUR][1000 genomes]
rs60163404	0.81[AFR][1000 genomes]
rs61134341	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73387915	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73387940	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8033305	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8033306	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9806373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34292000-34315000	Weak transcription	Aorta	Aorta
2	chr15:34294800-34315600	Weak transcription	Left Ventricle	heart
3	chr15:34304200-34319800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:34309000-34317400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:34309400-34316000	Weak transcription	Brain Angular Gyrus	brain
6	chr15:34309400-34330000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:34309600-34330000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:34310600-34315800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:34310800-34315800	Weak transcription	Fetal Stomach	stomach
10	chr15:34311000-34318600	Weak transcription	Primary T cells from cord blood	blood
11	chr15:34311200-34315000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:34311200-34315800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr15:34314000-34315000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:34314200-34315000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:34314200-34315000	Enhancers	Brain Anterior Caudate	brain
16	chr15:34314200-34326400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:34314400-34315000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr15:34314400-34315000	Enhancers	Fetal Brain Female	brain
19	chr15:34314400-34316400	Enhancers	Brain Substantia Nigra	brain
20	chr15:34314600-34315000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr15:34314600-34315000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:34314600-34315200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:34314600-34315800	Weak transcription	Brain Cingulate Gyrus	brain

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