Variant report

Variant	rs57207257
Chromosome Location	chr8:61391375-61391376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61390369..61392056-chr8:61395444..61397450,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs16926265	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926273	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56957672	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57310966	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58443130	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58486252	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58847436	0.91[EUR][1000 genomes]
rs58916286	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58933078	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59531479	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60075768	0.91[EUR][1000 genomes]
rs60448147	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60730808	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60880721	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61277001	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61514087	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990951	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003631	1.00[ASN][1000 genomes]
rs7013829	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018346	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73243809	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73253446	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73253452	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73253470	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255451	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255459	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255467	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255485	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257441	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257447	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257453	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257469	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257475	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257492	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259409	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259412	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259436	0.91[EUR][1000 genomes]
rs73259441	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259444	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259456	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259478	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259486	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261229	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261232	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261235	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261240	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261257	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261277	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817907	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826092	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839296	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846100	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv971314	chr8:61359401-61436209	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61390600-61391800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:61390600-61392200	Enhancers	Hela-S3	cervix
3	chr8:61390600-61394400	Enhancers	Placenta	Placenta
4	chr8:61391000-61391400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:61391000-61391800	Enhancers	HMEC	breast
6	chr8:61391000-61392200	Enhancers	NHEK	skin
7	chr8:61391000-61393000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:61391000-61394000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:61391200-61392800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:61391200-61396000	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links