Variant report

Variant	rs73257447
Chromosome Location	chr8:61416684-61416685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61416515..61419476-chr8:61427769..61431192,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104388	Chromatin interaction
ENSG00000251396	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs16926265	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926273	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56957672	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57207257	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57310966	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58443130	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58486252	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58847436	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58916286	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58933078	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59531479	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60075768	0.91[EUR][1000 genomes]
rs60448147	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60730808	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60880721	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61277001	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61514087	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990951	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003631	1.00[ASN][1000 genomes]
rs7013829	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018346	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73243809	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73253446	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73253452	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73253470	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255451	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255459	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255467	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255485	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257441	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257451	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73257453	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257469	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257492	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259409	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259412	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259436	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73259441	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259444	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259456	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259478	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259486	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261229	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261232	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261235	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261240	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261257	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261277	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817907	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826092	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839296	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846100	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv971314	chr8:61359401-61436209	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61413000-61428800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:61413000-61428800	Weak transcription	Esophagus	oesophagus
3	chr8:61414400-61419800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:61415000-61416800	Enhancers	Osteobl	bone
5	chr8:61415200-61416800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:61415200-61416800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr8:61415200-61416800	Enhancers	HSMM	muscle
8	chr8:61415200-61417000	Enhancers	NH-A	brain
9	chr8:61415800-61416800	Enhancers	K562	blood
10	chr8:61416600-61416800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr8:61416600-61427800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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