Variant report

Variant	rs57223839
Chromosome Location	chr11:6370741-6370742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2723673	1.00[ASN][1000 genomes]
rs55731419	1.00[ASN][1000 genomes]
rs58272651	1.00[ASN][1000 genomes]
rs61876772	1.00[ASN][1000 genomes]
rs61876776	1.00[ASN][1000 genomes]
rs72896220	1.00[ASN][1000 genomes]
rs72896222	1.00[ASN][1000 genomes]
rs72896228	1.00[ASN][1000 genomes]
rs72896232	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv534152	chr11:6282812-6659230	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1046738	chr11:6287877-6393438	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1046995	chr11:6339868-6658766	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:6355000-6384200	Weak transcription	Right Ventricle	heart
2	chr11:6356400-6377800	Weak transcription	Aorta	Aorta
3	chr11:6357000-6378000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:6361000-6377400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:6361200-6373200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:6364400-6374800	Weak transcription	Left Ventricle	heart
7	chr11:6369200-6373400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:6370400-6372000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr11:6370400-6377800	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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