Variant report

Variant	rs72896222
Chromosome Location	chr11:6382031-6382032
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2723673	1.00[ASN][1000 genomes]
rs55731419	1.00[ASN][1000 genomes]
rs57223839	1.00[ASN][1000 genomes]
rs58272651	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876772	1.00[ASN][1000 genomes]
rs61876776	1.00[ASN][1000 genomes]
rs72896220	1.00[ASN][1000 genomes]
rs72896228	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896232	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv534152	chr11:6282812-6659230	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1046738	chr11:6287877-6393438	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1046995	chr11:6339868-6658766	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:6355000-6384200	Weak transcription	Right Ventricle	heart
2	chr11:6372200-6383800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:6375000-6384000	Weak transcription	Adipose Nuclei	Adipose
4	chr11:6375200-6383400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:6375200-6383800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:6375200-6386200	Weak transcription	Stomach Mucosa	stomach
7	chr11:6378400-6383600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:6378600-6383600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:6378600-6384000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:6378800-6383600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:6378800-6383600	Weak transcription	Aorta	Aorta
12	chr11:6378800-6383600	Weak transcription	Pancreas	Pancrea
13	chr11:6378800-6383800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:6378800-6383800	Weak transcription	NHEK	skin
15	chr11:6379000-6383800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:6379200-6383600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:6379200-6383800	Weak transcription	HMEC	breast
18	chr11:6379200-6384000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:6379400-6383800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:6379400-6384200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:6379600-6384000	Weak transcription	NHDF-Ad	bronchial
22	chr11:6379600-6384200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:6379600-6384200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:6381000-6385000	Enhancers	Fetal Heart	heart
25	chr11:6381200-6382200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:6381200-6382200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:6381400-6384600	Enhancers	Placenta Amnion	Placenta Amnion
28	chr11:6381600-6383600	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:6381600-6383800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:6381800-6384000	Weak transcription	HSMMtube	muscle
31	chr11:6381800-6384200	Weak transcription	Osteobl	bone
32	chr11:6382000-6384200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links