Variant report

Variant	rs572257898
Chromosome Location	chr15:93198127-93198128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr15:93197964-93198577	GM12878	blood:	n/a	n/a
2	SIN3AK20	chr15:93198106-93199396	MCF-7	breast:	n/a	n/a
3	REST	chr15:93197985-93199487	H1-neurons	neurons:	n/a	chr15:93198949-93198969 chr15:93198448-93198461
4	ZNF384	chr15:93197966-93198217	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:93145840..93149737-chr15:93196292..93199149,3	MCF-7	breast:
2	chr15:93197537..93199243-chr15:93427702..93429402,2	MCF-7	breast:
3	chr15:93197891..93200562-chr3:14219402..14221003,2	MCF-7	breast:
4	chr15:93187167..93190385-chr15:93197959..93201879,3	K562	blood:
5	chr15:93196488..93198404-chr17:67442282..67443797,2	MCF-7	breast:

Variant related genes	Relation type
FAM174B	TF binding region
ENSG00000271763	Chromatin interaction
ENSG00000154767	Chromatin interaction
ENSG00000272888	Chromatin interaction
ENSG00000185442	Chromatin interaction
ENSG00000170860	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	esv3374130	chr15:93197573-93200121	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93183200-93198400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:93193800-93199000	Enhancers	Fetal Heart	heart
3	chr15:93194200-93198200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:93194400-93198400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:93194600-93198400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:93195200-93199600	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr15:93195800-93198400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:93196200-93198200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:93196600-93199200	Enhancers	Fetal Brain Male	brain
10	chr15:93196800-93198200	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr15:93196800-93198400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:93197000-93198200	Enhancers	Fetal Thymus	thymus
13	chr15:93197000-93198400	Enhancers	Esophagus	oesophagus
14	chr15:93197000-93199600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:93197200-93198200	Flanking Active TSS	HUVEC	blood vessel
16	chr15:93197200-93198400	Enhancers	Brain Substantia Nigra	brain
17	chr15:93197200-93198400	Weak transcription	Placenta	Placenta
18	chr15:93197200-93198400	Weak transcription	Spleen	Spleen
19	chr15:93197200-93199000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr15:93197200-93199400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:93197200-93199400	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr15:93197200-93199600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr15:93197400-93198200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:93197400-93198200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
25	chr15:93197400-93198200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:93197400-93198200	Flanking Active TSS	Fetal Lung	lung
27	chr15:93197400-93198400	Enhancers	Primary hematopoietic stem cells	blood
28	chr15:93197400-93198400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr15:93197400-93198400	Flanking Active TSS	GM12878-XiMat	blood
30	chr15:93197400-93199400	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr15:93197400-93199600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
32	chr15:93197600-93198200	Active TSS	Fetal Brain Female	brain
33	chr15:93197600-93198200	Flanking Active TSS	Fetal Intestine Large	intestine
34	chr15:93197600-93198200	Flanking Active TSS	Fetal Muscle Leg	muscle
35	chr15:93197600-93198400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr15:93197600-93198400	Flanking Active TSS	Fetal Stomach	stomach
37	chr15:93197600-93198400	Enhancers	Placenta Amnion	Placenta Amnion
38	chr15:93197600-93198600	Flanking Active TSS	Fetal Muscle Trunk	muscle
39	chr15:93197600-93198800	Active TSS	Gastric	stomach
40	chr15:93197600-93199200	Active TSS	HSMM	muscle
41	chr15:93197600-93199400	Active TSS	Pancreas	Pancrea
42	chr15:93197800-93198200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
43	chr15:93197800-93198200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
44	chr15:93197800-93198200	Flanking Active TSS	Duodenum Mucosa	Duodenum
45	chr15:93197800-93198200	Weak transcription	Lung	lung
46	chr15:93197800-93198400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
47	chr15:93197800-93198400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
48	chr15:93197800-93198400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr15:93197800-93198400	Weak transcription	Left Ventricle	heart
50	chr15:93197800-93199000	Active TSS	Rectal Mucosa Donor 31	rectum

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