Variant report

Variant	rs572268423
Chromosome Location	chr3:53763320-53763321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53763032..53764866-chr3:53879026..53880653,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000016391	Chromatin interaction
ENSG00000056736	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1013783	chr3:53694418-53934781	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1007655	chr3:53742148-53767689	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1002452	chr3:53742148-53802811	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1000280	chr3:53742736-53770588	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv520027	chr3:53762713-53784625	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53740200-53764400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:53742600-53778000	Weak transcription	Pancreas	Pancrea
3	chr3:53744200-53764600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:53744400-53763800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:53753600-53766200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:53754200-53763600	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:53755200-53764400	Weak transcription	Brain Angular Gyrus	brain
8	chr3:53755600-53764400	Weak transcription	Brain Anterior Caudate	brain
9	chr3:53756600-53763800	Strong transcription	Fetal Lung	lung
10	chr3:53756800-53763400	Weak transcription	Fetal Brain Male	brain
11	chr3:53759400-53764400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:53761200-53764600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr3:53761600-53764400	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:53761600-53766200	Weak transcription	Lung	lung
15	chr3:53761600-53781800	Weak transcription	Spleen	Spleen
16	chr3:53761800-53765400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:53761800-53766000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr3:53762400-53765400	Enhancers	NHDF-Ad	bronchial
19	chr3:53762600-53764000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr3:53762600-53765200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:53762800-53763600	Enhancers	Fetal Intestine Small	intestine
22	chr3:53763000-53763600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:53763000-53763600	Enhancers	Fetal Intestine Large	intestine
24	chr3:53763000-53764000	Enhancers	HepG2	liver
25	chr3:53763000-53764200	Enhancers	Liver	Liver
26	chr3:53763000-53764400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:53763000-53765600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr3:53763200-53764400	Weak transcription	Fetal Kidney	kidney
29	chr3:53763200-53765200	Enhancers	Fetal Heart	heart

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