Variant report

Variant	rs572332822
Chromosome Location	chr5:36924059-36924060
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36919106..36922235-chr5:36923697..36927353,5	K562	blood:
2	chr5:36878820..36881398-chr5:36921398..36924147,2	K562	blood:
3	chr5:36919106..36920877-chr5:36923697..36925234,2	K562	blood:
4	chr5:36910368..36911914-chr5:36922337..36924698,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv830264	chr5:36887002-36941494	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	esv2525217	chr5:36923901-36925158	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36895800-36928600	Weak transcription	HSMM	muscle
2	chr5:36899000-36926400	Weak transcription	Gastric	stomach
3	chr5:36905200-36927800	Weak transcription	Psoas Muscle	Psoas
4	chr5:36907400-36928600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:36907400-36938200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:36910200-36928000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr5:36911200-36928600	Weak transcription	A549	lung
8	chr5:36911600-36928600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:36913000-36925800	Weak transcription	Primary T cells from cord blood	blood
10	chr5:36913800-36931400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr5:36919600-36928000	Weak transcription	Ovary	ovary
12	chr5:36919600-36928000	Weak transcription	Small Intestine	intestine
13	chr5:36919600-36931400	Weak transcription	Left Ventricle	heart
14	chr5:36919600-36938200	Weak transcription	Pancreas	Pancrea
15	chr5:36919800-36925800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr5:36919800-36926200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:36919800-36953000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr5:36919800-36961600	Weak transcription	K562	blood
19	chr5:36920000-36928200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr5:36920000-36928600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr5:36920400-36951400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr5:36921000-36925800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr5:36921600-36925600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr5:36921600-36926600	Weak transcription	Colon Smooth Muscle	Colon
25	chr5:36921600-36929200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr5:36921600-36931600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr5:36921800-36924600	Weak transcription	Fetal Heart	heart
28	chr5:36921800-36924800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr5:36923200-36924600	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr5:36923200-36925200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr5:36923200-36926000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr5:36923400-36931400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr5:36923600-36925000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr5:36923600-36943600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr5:36923800-36924200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:36924000-36924800	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr5:36924000-36925000	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr5:36924000-36925400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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