Variant report

Variant	rs57234454
Chromosome Location	chr7:38255122-38255123
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:38254875..38255995-chr7:38357724..38359529,9	MCF-7	breast:
2	chr7:38253002..38255460-chr7:38256658..38259135,2	K562	blood:
3	chr7:38255012..38257306-chr7:38260650..38262240,2	K562	blood:
4	chr7:38146750..38147644-chr7:38255037..38256019,2	K562	blood:
5	chr7:38255022..38255645-chr7:38375302..38376120,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000211695	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12111691	0.84[AMR][1000 genomes]
rs12112821	0.84[AMR][1000 genomes]
rs55670304	0.84[AMR][1000 genomes]
rs55969247	0.84[AMR][1000 genomes]
rs56903162	0.81[AMR][1000 genomes]
rs57190517	0.84[AMR][1000 genomes]
rs59748716	0.84[AMR][1000 genomes]
rs73348615	0.84[AMR][1000 genomes]
rs73348622	0.84[AMR][1000 genomes]
rs73348627	0.84[AMR][1000 genomes]
rs73348628	0.84[AMR][1000 genomes]
rs73348650	0.84[AMR][1000 genomes]
rs73348667	0.84[AMR][1000 genomes]
rs73693871	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016355	chr7:38168232-38372719	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv830963	chr7:38172988-38344779	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv2758112	chr7:38218703-38523455	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	esv2759524	chr7:38218703-38523455	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv427776	chr7:38218703-38523455	Genic enhancers Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv830964	chr7:38218708-38390518	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	nsv1030349	chr7:38227528-38372719	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv538818	chr7:38227528-38372719	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv1025974	chr7:38227528-38503472	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
10	nsv538819	chr7:38227528-38503472	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
11	nsv433041	chr7:38229107-38358728	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv433044	chr7:38238119-38358728	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
13	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38218600-38259200	Weak transcription	Colonic Mucosa	Colon
2	chr7:38223600-38255600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr7:38228000-38256600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:38230200-38259200	Weak transcription	K562	blood
5	chr7:38232800-38255200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:38232800-38256000	Weak transcription	Fetal Brain Male	brain
7	chr7:38236800-38261600	Weak transcription	HMEC	breast
8	chr7:38237000-38255200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:38237200-38255600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:38237600-38258600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr7:38237800-38261600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:38238000-38257000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:38238000-38259200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:38238400-38255400	Weak transcription	Lung	lung
15	chr7:38238600-38268800	Weak transcription	Esophagus	oesophagus
16	chr7:38239200-38255600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr7:38239200-38256200	Weak transcription	Aorta	Aorta
18	chr7:38239800-38256600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:38245400-38255600	Weak transcription	HepG2	liver
20	chr7:38246600-38255600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr7:38247400-38255400	Weak transcription	Fetal Brain Female	brain
22	chr7:38247800-38255200	Weak transcription	Brain Anterior Caudate	brain
23	chr7:38247800-38255400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr7:38248400-38255200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr7:38249200-38256000	Weak transcription	NHEK	skin
26	chr7:38249200-38259200	Weak transcription	Spleen	Spleen
27	chr7:38249400-38256400	Weak transcription	Thymus	Thymus
28	chr7:38249600-38256400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:38249800-38256000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:38250400-38255200	Weak transcription	NHDF-Ad	bronchial
31	chr7:38250800-38255200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr7:38251200-38261400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr7:38251400-38256400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr7:38251400-38256400	Weak transcription	Left Ventricle	heart
35	chr7:38251600-38255400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr7:38251600-38255600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:38251600-38270400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:38251800-38255200	Weak transcription	Brain Angular Gyrus	brain
39	chr7:38251800-38255200	Weak transcription	Fetal Kidney	kidney
40	chr7:38251800-38256200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr7:38251800-38256200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr7:38251800-38270200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr7:38252000-38272400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:38252000-38273000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:38252400-38256000	Weak transcription	Right Atrium	heart
46	chr7:38252400-38256000	Weak transcription	Right Ventricle	heart
47	chr7:38253000-38255400	Weak transcription	Primary T cells from cord blood	blood
48	chr7:38253200-38255200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr7:38253400-38255600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr7:38253400-38256600	Weak transcription	H1 Cell Line	embryonic stem cell

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