Variant report

Variant	rs73348615
Chromosome Location	chr7:38215649-38215650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12111691	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12112821	1.00[AMR][1000 genomes]
rs55670304	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55969247	1.00[AMR][1000 genomes]
rs57190517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57234454	0.84[AMR][1000 genomes]
rs59748716	1.00[AMR][1000 genomes]
rs73348622	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73348627	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73348628	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73348650	1.00[AMR][1000 genomes]
rs73348667	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693871	1.00[AMR][1000 genomes]
rs73693875	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016355	chr7:38168232-38372719	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv830963	chr7:38172988-38344779	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv2762664	chr7:38201814-38228480	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38210200-38217000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:38210200-38217000	Weak transcription	NH-A	brain
3	chr7:38210400-38217000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:38211800-38217200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:38212400-38217200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr7:38212600-38217000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:38215200-38215800	ZNF genes & repeats	Liver	Liver
8	chr7:38215400-38216200	Weak transcription	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links