Variant report

Variant	rs572419880
Chromosome Location	chr15:62147365-62147366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904284	chr15:62123600-62243197	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv521334	chr15:62129809-62340126	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv527451	chr15:62129809-62340126	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904285	chr15:62146598-62246864	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv904286	chr15:62146598-62313373	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv904287	chr15:62146598-62338797	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv904288	chr15:62146598-62356386	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62132400-62159000	Weak transcription	HSMM	muscle
2	chr15:62132400-62171200	Weak transcription	HMEC	breast
3	chr15:62135000-62161600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr15:62136800-62150000	Weak transcription	HSMMtube	muscle
5	chr15:62138800-62184200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:62139200-62182200	Weak transcription	Brain Substantia Nigra	brain
7	chr15:62139400-62154800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:62139800-62185200	Weak transcription	NHLF	lung
9	chr15:62140000-62184800	Weak transcription	Right Ventricle	heart
10	chr15:62140200-62180000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:62140800-62149000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:62141000-62149400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:62141200-62149600	Weak transcription	Psoas Muscle	Psoas
14	chr15:62141200-62165400	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:62141400-62160600	Weak transcription	Placenta	Placenta
16	chr15:62141400-62161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:62141600-62149200	Weak transcription	Ovary	ovary
18	chr15:62141600-62161400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:62141600-62165000	Weak transcription	Thymus	Thymus
20	chr15:62141800-62149400	Weak transcription	Aorta	Aorta
21	chr15:62142000-62147400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:62142000-62165000	Weak transcription	Gastric	stomach
23	chr15:62142000-62209400	Weak transcription	Colonic Mucosa	Colon
24	chr15:62142200-62161600	Weak transcription	Fetal Stomach	stomach
25	chr15:62142200-62162800	Weak transcription	Hela-S3	cervix
26	chr15:62142400-62160800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr15:62142400-62163800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:62142400-62253000	Weak transcription	Spleen	Spleen
29	chr15:62142600-62209200	Weak transcription	K562	blood
30	chr15:62143000-62164000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:62143200-62151800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr15:62143200-62152400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr15:62143600-62148000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:62143600-62149000	Weak transcription	Fetal Brain Female	brain
35	chr15:62143800-62182200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:62143800-62235600	Weak transcription	Fetal Brain Male	brain
37	chr15:62144000-62159800	Weak transcription	Osteobl	bone
38	chr15:62144000-62194600	Weak transcription	Fetal Lung	lung
39	chr15:62144200-62149400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr15:62144200-62160600	Weak transcription	Fetal Thymus	thymus
41	chr15:62144400-62149000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:62144400-62149400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:62144400-62149400	Weak transcription	Left Ventricle	heart
44	chr15:62144400-62153200	Weak transcription	Fetal Intestine Small	intestine
45	chr15:62144400-62155200	Weak transcription	Dnd41	blood
46	chr15:62144600-62154800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr15:62144600-62155200	Weak transcription	A549	lung
48	chr15:62144800-62148400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr15:62144800-62151400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:62144800-62161400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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