Variant report

Variant	rs57262745
Chromosome Location	chr6:82754325-82754326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17644312	0.89[AMR][1000 genomes]
rs17644372	0.89[AMR][1000 genomes]
rs17644530	0.89[AMR][1000 genomes]
rs17717044	0.89[AMR][1000 genomes]
rs56674468	0.89[AMR][1000 genomes]
rs59014245	0.92[EUR][1000 genomes]
rs60273832	0.89[AMR][1000 genomes]
rs7775550	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82750800-82755800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:82751000-82754600	Weak transcription	NHDF-Ad	bronchial
3	chr6:82751000-82755400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:82751000-82755600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:82751000-82755600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:82751200-82755400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:82752600-82755400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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