Variant report

Variant	rs17644312
Chromosome Location	chr6:82741794-82741795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16893723	0.81[EUR][1000 genomes]
rs16893762	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17644372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17644530	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17717044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28761259	0.81[EUR][1000 genomes]
rs28829034	0.81[EUR][1000 genomes]
rs56674468	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57262745	0.89[AMR][1000 genomes]
rs60273832	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7775550	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9344239	0.81[EUR][1000 genomes]
rs9350940	0.81[EUR][1000 genomes]
rs9353045	0.81[EUR][1000 genomes]
rs9353046	0.81[EUR][1000 genomes]
rs9359510	0.81[EUR][1000 genomes]
rs9359511	0.81[EUR][1000 genomes]
rs9361879	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs9361880	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034389	chr6:82721569-82746599	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82732400-82748600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:82733200-82743800	Weak transcription	HSMM	muscle
3	chr6:82736600-82743200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:82739800-82741800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:82740600-82743200	Weak transcription	NHDF-Ad	bronchial
6	chr6:82740600-82743400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:82740600-82748600	Weak transcription	Left Ventricle	heart
8	chr6:82740600-82749400	Weak transcription	Right Atrium	heart
9	chr6:82740600-82750200	Weak transcription	HepG2	liver
10	chr6:82740800-82743400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:82741000-82743600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:82741000-82743600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:82741000-82744200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:82741200-82742200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:82741200-82742600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:82741400-82743400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:82741600-82742600	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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