Variant report

Variant	rs9359510
Chromosome Location	chr6:82709033-82709034
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1418298	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16893723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17644312	0.81[EUR][1000 genomes]
rs17644372	0.81[EUR][1000 genomes]
rs17717044	0.81[EUR][1000 genomes]
rs1935420	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28761259	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28829034	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4470889	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9294241	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9344239	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9350940	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9350941	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9353042	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9353043	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9353045	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9353046	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9353047	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9359507	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9359511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9361879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9361880	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9361881	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82704400-82709400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:82705000-82709600	Enhancers	NH-A	brain
3	chr6:82705400-82710800	Enhancers	HMEC	breast
4	chr6:82706000-82709200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:82706200-82715000	Weak transcription	Placenta	Placenta
6	chr6:82706800-82709200	Enhancers	NHDF-Ad	bronchial
7	chr6:82707000-82709400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:82707000-82710600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:82707400-82709600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:82707400-82710000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr6:82707400-82710800	Enhancers	NHEK	skin
12	chr6:82707600-82709200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:82707600-82709200	Enhancers	Hela-S3	cervix
14	chr6:82707600-82715200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:82707800-82714000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:82708200-82709400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:82708200-82709600	Enhancers	Osteobl	bone
18	chr6:82708200-82710400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:82708200-82722400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:82708800-82710000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:82708800-82710400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:82709000-82709200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:82709000-82709400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
24	chr6:82709000-82710000	Enhancers	HepG2	liver

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