Variant report

Variant	rs572704055
Chromosome Location	chr11:63755119-63755120
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63752288..63756029-chr11:63763681..63768717,11	MCF-7	breast:
2	chr11:63752274..63755193-chr11:64072992..64074621,2	MCF-7	breast:
3	chr11:63739151..63744415-chr11:63752010..63756596,9	MCF-7	breast:
4	chr11:63579621..63581291-chr11:63753774..63755303,2	MCF-7	breast:
5	chr11:63753400..63755949-chr11:63951622..63955787,3	K562	blood:
6	chr1:149857624..149859749-chr11:63753842..63756794,2	MCF-7	breast:
7	chr11:63752327..63755463-chr11:63951684..63954508,4	MCF-7	breast:
8	chr11:63682847..63685544-chr11:63752668..63755278,2	MCF-7	breast:
9	chr11:63684119..63685906-chr11:63753939..63756013,2	MCF-7	breast:
10	chr11:63754724..63756802-chr11:63908470..63911045,2	MCF-7	breast:
11	chr11:63753312..63755381-chr17:57782586..57784599,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133315	Chromatin interaction
ENSG00000168439	Chromatin interaction
ENSG00000168005	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000176340	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000256100	Chromatin interaction
ENSG00000167771	Chromatin interaction
ENSG00000173153	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000167770	Chromatin interaction
ENSG00000062716	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv897629	chr11:63664882-63866959	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
7	nsv897639	chr11:63691049-63844683	Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	esv1849906	chr11:63719273-63880383	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv1042075	chr11:63732454-63813164	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	esv29993	chr11:63738642-63864211	Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv897640	chr11:63744152-63835611	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv897641	chr11:63744152-63844683	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv897642	chr11:63744152-63866959	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
14	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
15	nsv897643	chr11:63754986-63844683	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
16	nsv897644	chr11:63754986-63849330	Bivalent Enhancer Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
17	nsv897645	chr11:63754986-63859751	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
18	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63753000-63755200	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr11:63753000-63755400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr11:63753200-63755200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr11:63753800-63755200	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr11:63754200-63755200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:63754200-63755200	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr11:63754200-63755200	Flanking Active TSS	Colonic Mucosa	Colon
8	chr11:63754200-63755400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:63754200-63755400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr11:63754400-63755200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr11:63754400-63755200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:63754400-63755200	Flanking Active TSS	Liver	Liver
13	chr11:63754400-63755200	Flanking Active TSS	Fetal Brain Male	brain
14	chr11:63754400-63755200	Flanking Active TSS	Fetal Brain Female	brain
15	chr11:63754400-63755200	Flanking Active TSS	Fetal Intestine Small	intestine
16	chr11:63754400-63755200	Flanking Active TSS	Rectal Smooth Muscle	rectum
17	chr11:63754400-63755200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr11:63754400-63755200	Flanking Active TSS	Dnd41	blood
19	chr11:63754400-63755200	Flanking Active TSS	NHLF	lung
20	chr11:63754400-63755200	Flanking Active TSS	Osteobl	bone
21	chr11:63754400-63755400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:63754400-63755400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:63754400-63755400	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr11:63754400-63755400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
25	chr11:63754400-63755400	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr11:63754600-63755200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:63754600-63755200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:63754600-63755200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr11:63754600-63755200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:63754600-63755200	Flanking Active TSS	Brain Angular Gyrus	brain
31	chr11:63754600-63755200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:63754600-63755200	Flanking Active TSS	Fetal Lung	lung
33	chr11:63754600-63755200	Enhancers	Small Intestine	intestine
34	chr11:63754600-63755200	Flanking Active TSS	HSMMtube	muscle
35	chr11:63754600-63755200	Flanking Active TSS	NH-A	brain
36	chr11:63754600-63755400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:63754600-63755400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:63754600-63755400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:63754600-63755400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
40	chr11:63754600-63755400	Flanking Active TSS	HMEC	breast
41	chr11:63754600-63755600	Enhancers	Spleen	Spleen
42	chr11:63754600-63758600	Weak transcription	Aorta	Aorta
43	chr11:63754800-63755200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
44	chr11:63754800-63755200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:63754800-63755200	Flanking Active TSS	H9 Cell Line	embryonic stem cell
46	chr11:63754800-63755200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:63754800-63755200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr11:63754800-63755200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr11:63754800-63755200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr11:63754800-63755200	Enhancers	Primary hematopoietic stem cells	blood

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