Variant report

Variant	rs57279020
Chromosome Location	chr3:146184220-146184221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:146139318..146141303-chr3:146183434..146185764,2	MCF-7	breast:
2	chr3:146176309..146178627-chr3:146183394..146185507,2	K562	blood:

Variant related genes	Relation type
ENSG00000163746	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10935633	0.84[AMR][1000 genomes]
rs11915907	0.86[AMR][1000 genomes]
rs11917946	0.86[AMR][1000 genomes]
rs11924998	0.92[AMR][1000 genomes]
rs11926182	0.92[AMR][1000 genomes]
rs11927821	0.86[AMR][1000 genomes]
rs12152259	0.84[AMR][1000 genomes]
rs2903837	0.86[AMR][1000 genomes]
rs35779013	0.92[AMR][1000 genomes]
rs3765179	0.92[AMR][1000 genomes]
rs3924718	0.86[AMR][1000 genomes]
rs4318525	0.92[AMR][1000 genomes]
rs57028178	0.92[AMR][1000 genomes]
rs57501572	0.92[AMR][1000 genomes]
rs58016179	0.92[AMR][1000 genomes]
rs59122638	0.87[AMR][1000 genomes]
rs59605619	0.92[AMR][1000 genomes]
rs59892217	0.92[AMR][1000 genomes]
rs59940298	0.89[AMR][1000 genomes]
rs60885345	0.92[AMR][1000 genomes]
rs61063526	0.92[AMR][1000 genomes]
rs6440440	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs6440444	0.87[AMR][1000 genomes]
rs6786556	0.92[AMR][1000 genomes]
rs73865704	0.89[AMR][1000 genomes]
rs73865706	0.89[AMR][1000 genomes]
rs73865708	0.89[AMR][1000 genomes]
rs73865710	0.92[AMR][1000 genomes]
rs73865716	0.92[AMR][1000 genomes]
rs73868809	0.89[AMR][1000 genomes]
rs73868810	0.89[AMR][1000 genomes]
rs7614407	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877618	chr3:146096182-146192324	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877622	chr3:146131961-146219740	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146181600-146185000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:146181600-146185200	Enhancers	NHDF-Ad	bronchial
3	chr3:146181600-146185800	Weak transcription	K562	blood
4	chr3:146181600-146187000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:146181800-146185000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:146182400-146185200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr3:146182600-146185200	Enhancers	A549	lung
8	chr3:146182600-146186000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:146183000-146186200	Weak transcription	Fetal Stomach	stomach
10	chr3:146183000-146187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:146183000-146187000	Weak transcription	HMEC	breast
12	chr3:146183000-146187000	Weak transcription	NHEK	skin
13	chr3:146183400-146185800	Weak transcription	Fetal Heart	heart
14	chr3:146183600-146186000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:146183600-146187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:146183800-146185400	Enhancers	NHLF	lung
17	chr3:146184000-146184800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr3:146184000-146185000	Enhancers	Hela-S3	cervix
19	chr3:146184000-146185200	Enhancers	Osteobl	bone
20	chr3:146184000-146186200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:146184000-146187000	Weak transcription	Right Atrium	heart
22	chr3:146184200-146184800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:146184200-146186800	Weak transcription	Esophagus	oesophagus
24	chr3:146184200-146186800	Weak transcription	Pancreas	Pancrea
25	chr3:146184200-146187000	Weak transcription	Aorta	Aorta
26	chr3:146184200-146187000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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