Variant report

Variant	rs7614407
Chromosome Location	chr3:146185724-146185725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:146185173..146186845-chr3:146259254..146261120,2	K562	blood:
2	chr3:146185354..146186858-chr3:146261288..146263091,2	MCF-7	breast:
3	chr3:146139318..146141303-chr3:146183434..146185764,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188313	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10935625	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935633	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915907	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11916260	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11916414	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11916417	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11917946	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918865	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11921657	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11924097	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11924116	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11924998	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926182	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926669	0.95[ASN][1000 genomes]
rs11927821	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928697	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11928822	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11929562	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12152259	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374006	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1849261	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2867866	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2867872	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2903837	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35779013	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3765179	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924718	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4089470	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4089471	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4308246	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4318525	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55978878	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56043733	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57028178	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57279020	0.95[AMR][1000 genomes]
rs57501572	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58016179	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58315390	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58674795	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59122638	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59605619	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59892217	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59940298	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60356977	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60409976	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60885345	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61063526	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440440	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440444	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6786556	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73865704	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73865706	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73865708	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73865710	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73865716	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73867560	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73867569	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73867575	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73868809	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73868810	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7432259	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621072	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7626996	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7646378	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7646493	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877618	chr3:146096182-146192324	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877622	chr3:146131961-146219740	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146181600-146185800	Weak transcription	K562	blood
2	chr3:146181600-146187000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:146182600-146186000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:146183000-146186200	Weak transcription	Fetal Stomach	stomach
5	chr3:146183000-146187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:146183000-146187000	Weak transcription	HMEC	breast
7	chr3:146183000-146187000	Weak transcription	NHEK	skin
8	chr3:146183400-146185800	Weak transcription	Fetal Heart	heart
9	chr3:146183600-146186000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:146183600-146187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:146184000-146186200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:146184000-146187000	Weak transcription	Right Atrium	heart
13	chr3:146184200-146186800	Weak transcription	Esophagus	oesophagus
14	chr3:146184200-146186800	Weak transcription	Pancreas	Pancrea
15	chr3:146184200-146187000	Weak transcription	Aorta	Aorta
16	chr3:146184200-146187000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:146184400-146186000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:146184800-146186000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:146185000-146185800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:146185000-146186000	Weak transcription	Hela-S3	cervix
21	chr3:146185000-146186200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:146185200-146186600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr3:146185400-146185800	Weak transcription	NHLF	lung
24	chr3:146185600-146185800	Enhancers	Gastric	stomach
25	chr3:146185600-146185800	Enhancers	Psoas Muscle	Psoas
26	chr3:146185600-146186200	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr3:146185600-146186400	Enhancers	A549	lung
28	chr3:146185600-146186400	Enhancers	Osteobl	bone
29	chr3:146185600-146187000	Enhancers	NHDF-Ad	bronchial

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