Variant report

Variant	rs2867866
Chromosome Location	chr3:146093761-146093762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10935625	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10935633	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11914425	1.00[JPT][hapmap]
rs11915907	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11916260	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11916414	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11916417	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11917946	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11918216	0.84[ASN][1000 genomes]
rs11918410	0.84[ASN][1000 genomes]
rs11918865	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924097	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11924116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924213	1.00[JPT][hapmap]
rs11924998	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11926182	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11926669	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927821	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11928697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928822	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11929562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12152259	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12374006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13061082	0.84[ASN][1000 genomes]
rs13062557	0.85[JPT][hapmap]
rs13067886	0.84[ASN][1000 genomes]
rs13071601	0.84[ASN][1000 genomes]
rs13082883	0.84[ASN][1000 genomes]
rs13082942	0.85[JPT][hapmap]
rs13083493	0.84[ASN][1000 genomes]
rs13086109	0.84[ASN][1000 genomes]
rs13096234	0.84[ASN][1000 genomes]
rs13097291	0.85[JPT][hapmap]
rs16858222	0.84[ASN][1000 genomes]
rs1849261	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2175667	0.85[JPT][hapmap]
rs2867872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2903837	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34136928	0.84[ASN][1000 genomes]
rs34401766	0.84[ASN][1000 genomes]
rs34633594	0.84[ASN][1000 genomes]
rs35233557	0.84[ASN][1000 genomes]
rs35292452	0.84[ASN][1000 genomes]
rs35436411	0.84[ASN][1000 genomes]
rs35484079	0.84[ASN][1000 genomes]
rs35638338	0.83[ASN][1000 genomes]
rs35744782	0.84[ASN][1000 genomes]
rs35779013	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36097942	0.84[ASN][1000 genomes]
rs3765179	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3804655	0.85[JPT][hapmap]
rs3804656	0.82[JPT][hapmap]
rs3924718	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4089470	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4089471	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4308246	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4318525	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55978878	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56043733	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57028178	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57501572	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58016179	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58315390	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58674795	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59122638	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59605619	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59892217	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59940298	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60356977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60409976	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60885345	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61063526	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6440440	1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6440444	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs66810063	0.84[ASN][1000 genomes]
rs6780315	0.84[ASN][1000 genomes]
rs6786556	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6806643	1.00[JPT][hapmap]
rs71300396	0.84[ASN][1000 genomes]
rs71300397	0.84[ASN][1000 genomes]
rs71300398	0.84[ASN][1000 genomes]
rs71300400	0.84[ASN][1000 genomes]
rs73865704	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73865706	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73865708	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73865710	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73865716	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73867560	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73867569	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73867575	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73868809	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73868810	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7432259	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7609910	0.84[ASN][1000 genomes]
rs7614407	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7621072	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7626996	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7646378	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7646493	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647333	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv536759	chr3:146087689-146123589	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1011893	chr3:146090110-146125010	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146091600-146094800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:146092000-146094000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:146093000-146093800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:146093000-146098400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:146093000-146104800	Weak transcription	Fetal Lung	lung
6	chr3:146093200-146095800	Weak transcription	Ovary	ovary

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