Variant report

Variant	rs13097291
Chromosome Location	chr3:145973865-145973866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs11916269	1.00[ASN][1000 genomes]
rs11924213	1.00[JPT][hapmap]
rs11924998	0.85[JPT][hapmap]
rs13062557	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13063066	1.00[ASN][1000 genomes]
rs13064230	1.00[ASN][1000 genomes]
rs13071899	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072399	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13073749	1.00[ASN][1000 genomes]
rs13082942	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs13085381	1.00[ASN][1000 genomes]
rs13092543	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398124	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858173	0.85[AFR][1000 genomes]
rs16858176	0.84[AFR][1000 genomes]
rs16858179	0.84[AFR][1000 genomes]
rs2175666	0.82[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2175667	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs34100380	0.92[ASN][1000 genomes]
rs34286112	1.00[ASN][1000 genomes]
rs34287919	0.92[ASN][1000 genomes]
rs34363776	0.92[ASN][1000 genomes]
rs34370775	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34522376	0.92[ASN][1000 genomes]
rs34839095	0.92[ASN][1000 genomes]
rs34901415	1.00[ASN][1000 genomes]
rs34965829	1.00[ASN][1000 genomes]
rs35054584	1.00[ASN][1000 genomes]
rs35110814	0.92[ASN][1000 genomes]
rs35231667	0.92[ASN][1000 genomes]
rs35366505	0.92[ASN][1000 genomes]
rs35403397	1.00[ASN][1000 genomes]
rs35466414	1.00[ASN][1000 genomes]
rs35632120	1.00[ASN][1000 genomes]
rs35655354	1.00[ASN][1000 genomes]
rs35658240	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35723694	0.92[ASN][1000 genomes]
rs35969224	0.92[ASN][1000 genomes]
rs3765179	0.85[JPT][hapmap]
rs3804655	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3804656	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3828380	0.92[ASN][1000 genomes]
rs41358845	0.81[MKK][hapmap]
rs41537446	0.85[AFR][1000 genomes]
rs4318525	0.85[JPT][hapmap]
rs56945578	0.82[AFR][1000 genomes]
rs57202132	0.85[AFR][1000 genomes]
rs57555021	0.85[AFR][1000 genomes]
rs57852021	0.85[AFR][1000 genomes]
rs58284373	0.85[AFR][1000 genomes]
rs58434679	0.85[AFR][1000 genomes]
rs59001257	0.87[AFR][1000 genomes]
rs59060080	0.87[AFR][1000 genomes]
rs59202860	0.85[AFR][1000 genomes]
rs60271422	0.85[AFR][1000 genomes]
rs60489907	0.87[AFR][1000 genomes]
rs60843942	0.85[AFR][1000 genomes]
rs60922478	0.85[AFR][1000 genomes]
rs61440265	0.85[AFR][1000 genomes]
rs6766764	0.92[ASN][1000 genomes]
rs6782950	0.92[ASN][1000 genomes]
rs6794565	0.92[ASN][1000 genomes]
rs71300385	0.92[ASN][1000 genomes]
rs71300386	1.00[ASN][1000 genomes]
rs71300388	1.00[ASN][1000 genomes]
rs71300389	1.00[ASN][1000 genomes]
rs71300390	1.00[ASN][1000 genomes]
rs71300391	1.00[ASN][1000 genomes]
rs72992981	0.87[AFR][1000 genomes]
rs72992986	0.85[AFR][1000 genomes]
rs72992988	0.87[AFR][1000 genomes]
rs72992989	0.87[AFR][1000 genomes]
rs72993002	0.87[AFR][1000 genomes]
rs72995008	0.85[AFR][1000 genomes]
rs72995012	0.85[AFR][1000 genomes]
rs72995014	0.85[AFR][1000 genomes]
rs72995019	0.83[AFR][1000 genomes]
rs72995025	0.85[AFR][1000 genomes]
rs72995029	0.85[AFR][1000 genomes]
rs73865394	0.84[AFR][1000 genomes]
rs73867504	0.85[AFR][1000 genomes]
rs73867507	0.80[AFR][1000 genomes]
rs73867511	0.85[AFR][1000 genomes]
rs73867513	0.82[AFR][1000 genomes]
rs73867518	0.84[AFR][1000 genomes]
rs73867526	1.00[ASN][1000 genomes]
rs7614839	0.92[ASN][1000 genomes]
rs7630137	0.87[AFR][1000 genomes]
rs7630230	0.87[AFR][1000 genomes]
rs7642484	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7642529	0.87[AFR][1000 genomes]
rs7652262	0.87[AFR][1000 genomes]
rs7652376	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv877616	chr3:145921954-145983688	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3452197	chr3:145950303-145974111	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3333990	chr3:145950303-145982133	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145969200-145974600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:145969200-145974800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:145971600-145974600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:145973600-145974000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
5	chr3:145973800-145974200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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