Variant report

Variant	rs7652376
Chromosome Location	chr3:145977891-145977892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs11914425	0.85[JPT][hapmap]
rs11916269	1.00[ASN][1000 genomes]
rs11924213	1.00[JPT][hapmap]
rs11924998	0.85[JPT][hapmap]
rs13062557	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13063066	1.00[ASN][1000 genomes]
rs13064230	1.00[ASN][1000 genomes]
rs13071899	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13073749	1.00[ASN][1000 genomes]
rs13082942	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs13085381	1.00[ASN][1000 genomes]
rs13092543	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097291	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398124	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858173	0.92[AFR][1000 genomes]
rs16858176	0.91[AFR][1000 genomes]
rs16858179	0.91[AFR][1000 genomes]
rs2175666	0.82[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2175667	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs34100380	0.92[ASN][1000 genomes]
rs34286112	1.00[ASN][1000 genomes]
rs34287919	0.92[ASN][1000 genomes]
rs34363776	0.92[ASN][1000 genomes]
rs34370775	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34522376	0.92[ASN][1000 genomes]
rs34839095	0.92[ASN][1000 genomes]
rs34901415	1.00[ASN][1000 genomes]
rs34965829	1.00[ASN][1000 genomes]
rs35054584	1.00[ASN][1000 genomes]
rs35110814	0.92[ASN][1000 genomes]
rs35231667	0.92[ASN][1000 genomes]
rs35366505	0.92[ASN][1000 genomes]
rs35403397	1.00[ASN][1000 genomes]
rs35466414	1.00[ASN][1000 genomes]
rs35632120	1.00[ASN][1000 genomes]
rs35655354	1.00[ASN][1000 genomes]
rs35658240	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35723694	0.92[ASN][1000 genomes]
rs35969224	0.92[ASN][1000 genomes]
rs3765179	0.85[JPT][hapmap]
rs3804655	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3804656	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3828380	0.92[ASN][1000 genomes]
rs41537446	0.92[AFR][1000 genomes]
rs4318525	0.85[JPT][hapmap]
rs56945578	0.90[AFR][1000 genomes]
rs57202132	0.92[AFR][1000 genomes]
rs57555021	0.92[AFR][1000 genomes]
rs57852021	0.92[AFR][1000 genomes]
rs58284373	0.92[AFR][1000 genomes]
rs58434679	0.92[AFR][1000 genomes]
rs59001257	0.94[AFR][1000 genomes]
rs59060080	0.94[AFR][1000 genomes]
rs59202860	0.92[AFR][1000 genomes]
rs60271422	0.92[AFR][1000 genomes]
rs60489907	0.94[AFR][1000 genomes]
rs60843942	0.92[AFR][1000 genomes]
rs60922478	0.92[AFR][1000 genomes]
rs61440265	0.92[AFR][1000 genomes]
rs6766764	0.92[ASN][1000 genomes]
rs6782950	0.92[ASN][1000 genomes]
rs6794565	0.92[ASN][1000 genomes]
rs71300385	0.92[ASN][1000 genomes]
rs71300386	1.00[ASN][1000 genomes]
rs71300388	1.00[ASN][1000 genomes]
rs71300389	1.00[ASN][1000 genomes]
rs71300390	1.00[ASN][1000 genomes]
rs71300391	1.00[ASN][1000 genomes]
rs72992981	0.94[AFR][1000 genomes]
rs72992986	0.92[AFR][1000 genomes]
rs72992988	0.94[AFR][1000 genomes]
rs72992989	0.94[AFR][1000 genomes]
rs72993002	0.94[AFR][1000 genomes]
rs72995008	0.92[AFR][1000 genomes]
rs72995010	0.85[AFR][1000 genomes]
rs72995012	0.92[AFR][1000 genomes]
rs72995014	0.92[AFR][1000 genomes]
rs72995019	0.91[AFR][1000 genomes]
rs72995025	0.92[AFR][1000 genomes]
rs72995029	0.92[AFR][1000 genomes]
rs73865394	0.91[AFR][1000 genomes]
rs73867504	0.92[AFR][1000 genomes]
rs73867507	0.87[AFR][1000 genomes]
rs73867511	0.92[AFR][1000 genomes]
rs73867513	0.90[AFR][1000 genomes]
rs73867518	0.91[AFR][1000 genomes]
rs73867526	1.00[ASN][1000 genomes]
rs7614839	0.92[ASN][1000 genomes]
rs7630137	0.94[AFR][1000 genomes]
rs7630230	0.94[AFR][1000 genomes]
rs7642484	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7642529	0.94[AFR][1000 genomes]
rs7652262	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv877616	chr3:145921954-145983688	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3333990	chr3:145950303-145982133	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145975600-145982200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:145975600-145982800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:145976000-145982800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:145976200-145983600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:145977000-145984600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:145977400-145979000	Enhancers	Liver	Liver
7	chr3:145977600-145978600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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