Variant report

Variant	rs34363776
Chromosome Location	chr3:145918543-145918544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11916269	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13062557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13063066	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13064230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13071899	0.92[ASN][1000 genomes]
rs13072399	0.92[ASN][1000 genomes]
rs13073749	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13082942	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13085381	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13092543	0.92[ASN][1000 genomes]
rs13097291	0.92[ASN][1000 genomes]
rs1398124	0.92[ASN][1000 genomes]
rs2175666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2175667	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34100380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34286112	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34287919	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34370775	0.92[ASN][1000 genomes]
rs34522376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34839095	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34901415	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34965829	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35054584	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35110814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35231667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35366505	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35403397	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35466414	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35632120	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35655354	0.92[ASN][1000 genomes]
rs35658240	0.92[ASN][1000 genomes]
rs35723694	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35969224	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36003152	1.00[AFR][1000 genomes]
rs3804655	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804656	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3828380	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6766764	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794565	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71300388	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71300389	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71300390	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71300391	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73867526	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7614839	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7642484	0.92[ASN][1000 genomes]
rs7652376	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012485	chr3:145861750-145947125	Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536758	chr3:145861750-145947125	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145897000-145933600	Weak transcription	Fetal Stomach	stomach
2	chr3:145901000-145923800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:145902800-145923000	Weak transcription	Osteobl	bone
4	chr3:145902800-145923600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:145903000-145934800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:145905000-145933600	Weak transcription	NHLF	lung
7	chr3:145907000-145938600	Weak transcription	Fetal Intestine Small	intestine
8	chr3:145907600-145939200	Weak transcription	Brain Anterior Caudate	brain
9	chr3:145908200-145936400	Weak transcription	A549	lung
10	chr3:145909600-145939200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:145910400-145932400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:145910400-145940000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:145912200-145923800	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:145912600-145923600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:145913200-145920200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:145913200-145920600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:145913200-145923200	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:145913400-145920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:145913800-145939200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:145914000-145923400	Weak transcription	Fetal Intestine Large	intestine
21	chr3:145914200-145920200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:145914200-145937000	Weak transcription	Placenta	Placenta
23	chr3:145914600-145940200	Weak transcription	Gastric	stomach
24	chr3:145914800-145919200	Weak transcription	Left Ventricle	heart
25	chr3:145914800-145924200	Weak transcription	Aorta	Aorta
26	chr3:145914800-145940200	Weak transcription	Psoas Muscle	Psoas
27	chr3:145914800-145940400	Weak transcription	Spleen	Spleen
28	chr3:145917000-145918600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr3:145917000-145918600	Strong transcription	Stomach Smooth Muscle	stomach
30	chr3:145917000-145918800	Strong transcription	Liver	Liver
31	chr3:145917000-145919000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:145917000-145921400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr3:145917400-145918800	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr3:145917400-145925200	Strong transcription	Adipose Nuclei	Adipose
35	chr3:145917800-145918600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr3:145917800-145920600	Weak transcription	Fetal Lung	lung
37	chr3:145917800-145920800	Weak transcription	Ovary	ovary
38	chr3:145917800-145923000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:145917800-145923800	Weak transcription	HSMMtube	muscle
40	chr3:145917800-145940400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr3:145918000-145940400	Weak transcription	Pancreas	Pancrea
42	chr3:145918200-145918600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:145918200-145918600	Strong transcription	HepG2	liver
44	chr3:145918200-145918600	Enhancers	HUVEC	blood vessel
45	chr3:145918200-145918600	Enhancers	NHDF-Ad	bronchial
46	chr3:145918200-145919800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr3:145918200-145924200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr3:145918200-145924200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr3:145918400-145940400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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