Variant report

Variant	rs13092543
Chromosome Location	chr3:145996473-145996474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:145992454..145994295-chr3:145994384..145997157,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10935633	0.85[JPT][hapmap]
rs11914425	0.85[JPT][hapmap]
rs11916269	1.00[ASN][1000 genomes]
rs11924213	1.00[JPT][hapmap]
rs11924998	0.85[JPT][hapmap]
rs13062557	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13063066	1.00[ASN][1000 genomes]
rs13064230	1.00[ASN][1000 genomes]
rs13071899	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072399	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13073749	1.00[ASN][1000 genomes]
rs13082942	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs13085381	1.00[ASN][1000 genomes]
rs13097291	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398124	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2175666	0.82[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2175667	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs34100380	0.92[ASN][1000 genomes]
rs34286112	1.00[ASN][1000 genomes]
rs34287919	0.92[ASN][1000 genomes]
rs34363776	0.92[ASN][1000 genomes]
rs34370775	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34522376	0.92[ASN][1000 genomes]
rs34839095	0.92[ASN][1000 genomes]
rs34901415	1.00[ASN][1000 genomes]
rs34965829	1.00[ASN][1000 genomes]
rs35054584	1.00[ASN][1000 genomes]
rs35110814	0.92[ASN][1000 genomes]
rs35231667	0.92[ASN][1000 genomes]
rs35292452	0.86[AFR][1000 genomes]
rs35366505	0.92[ASN][1000 genomes]
rs35403397	1.00[ASN][1000 genomes]
rs35466414	1.00[ASN][1000 genomes]
rs35632120	1.00[ASN][1000 genomes]
rs35655354	1.00[ASN][1000 genomes]
rs35658240	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35723694	0.92[ASN][1000 genomes]
rs35969224	0.92[ASN][1000 genomes]
rs3765179	0.85[JPT][hapmap]
rs3804655	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3804656	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3828380	0.92[ASN][1000 genomes]
rs4318525	0.85[JPT][hapmap]
rs6440440	0.85[JPT][hapmap]
rs6440444	0.85[JPT][hapmap]
rs6766764	0.92[ASN][1000 genomes]
rs6782950	0.92[ASN][1000 genomes]
rs6794565	0.92[ASN][1000 genomes]
rs6806643	0.85[JPT][hapmap]
rs71300385	0.92[ASN][1000 genomes]
rs71300386	1.00[ASN][1000 genomes]
rs71300388	1.00[ASN][1000 genomes]
rs71300389	1.00[ASN][1000 genomes]
rs71300390	1.00[ASN][1000 genomes]
rs71300391	1.00[ASN][1000 genomes]
rs73867526	1.00[ASN][1000 genomes]
rs7614839	0.92[ASN][1000 genomes]
rs7642484	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652376	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145983800-145998800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:145991000-145997600	Enhancers	HUVEC	blood vessel
3	chr3:145994800-145999200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:145995000-145996600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:145995000-145997800	Enhancers	Fetal Intestine Small	intestine
6	chr3:145995000-145998000	Enhancers	Fetal Lung	lung
7	chr3:145995200-145997000	Enhancers	Adipose Nuclei	Adipose
8	chr3:145995400-145996600	Enhancers	Rectal Smooth Muscle	rectum
9	chr3:145995400-145997200	Enhancers	Hela-S3	cervix
10	chr3:145995400-145997200	Enhancers	NHDF-Ad	bronchial
11	chr3:145995600-145996600	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr3:145995600-145996600	Enhancers	Fetal Muscle Leg	muscle
13	chr3:145995600-145996600	Enhancers	NH-A	brain
14	chr3:145995600-145997000	Enhancers	Liver	Liver
15	chr3:145995600-145997800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:145995800-145996800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr3:145995800-145997000	Enhancers	Colon Smooth Muscle	Colon
18	chr3:145995800-145998600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:145996000-145996600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:145996000-145996600	Enhancers	HepG2	liver
21	chr3:145996000-145997000	Enhancers	Fetal Intestine Large	intestine
22	chr3:145996000-145997200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:145996000-145997800	Enhancers	Fetal Stomach	stomach
24	chr3:145996200-145996600	Enhancers	Ovary	ovary
25	chr3:145996200-145997000	Enhancers	Aorta	Aorta
26	chr3:145996200-145997200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:145996200-145997200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr3:145996200-145997400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:145996400-145996800	Enhancers	NHLF	lung
30	chr3:145996400-145997000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:145996400-145997000	Enhancers	Left Ventricle	heart
32	chr3:145996400-145997000	Enhancers	Right Atrium	heart
33	chr3:145996400-145997000	Enhancers	Osteobl	bone

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