Variant report

Variant	rs11916269
Chromosome Location	chr3:145987210-145987211
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:145986622..145989134-chr3:145993598..145995580,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs11919756	0.87[AFR][1000 genomes]
rs11920604	0.84[AFR][1000 genomes]
rs11927463	0.81[AFR][1000 genomes]
rs11928255	0.85[AFR][1000 genomes]
rs11928534	0.83[AFR][1000 genomes]
rs11929382	0.83[AFR][1000 genomes]
rs13062557	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13063066	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064230	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071899	1.00[ASN][1000 genomes]
rs13072399	1.00[ASN][1000 genomes]
rs13073749	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082942	0.86[EUR][1000 genomes]
rs13085381	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092543	1.00[ASN][1000 genomes]
rs13097291	1.00[ASN][1000 genomes]
rs1398124	1.00[ASN][1000 genomes]
rs16858193	0.88[AFR][1000 genomes]
rs16858200	0.87[AFR][1000 genomes]
rs2175666	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2175667	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34100380	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34286112	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34287919	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34363776	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34370775	1.00[ASN][1000 genomes]
rs34522376	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34839095	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34901415	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34965829	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35045356	0.88[AFR][1000 genomes]
rs35054584	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35110814	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35231667	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35366505	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35403397	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35466414	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35632120	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35655354	1.00[ASN][1000 genomes]
rs35658240	1.00[ASN][1000 genomes]
rs35723694	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35969224	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3804655	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3804656	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3828380	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6440424	0.87[AFR][1000 genomes]
rs6440425	0.87[AFR][1000 genomes]
rs6766764	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6780223	0.87[AFR][1000 genomes]
rs6780240	0.87[AFR][1000 genomes]
rs6782950	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6788357	0.83[AFR][1000 genomes]
rs6793309	0.87[AFR][1000 genomes]
rs6794565	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71300385	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71300386	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300388	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300389	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300390	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72997087	0.88[AFR][1000 genomes]
rs72997096	0.86[AFR][1000 genomes]
rs72997098	0.88[AFR][1000 genomes]
rs72999112	0.87[AFR][1000 genomes]
rs72999115	0.82[AFR][1000 genomes]
rs72999117	0.87[AFR][1000 genomes]
rs72999118	0.84[AFR][1000 genomes]
rs72999119	0.83[AFR][1000 genomes]
rs73867526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7614839	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7623124	0.87[AFR][1000 genomes]
rs7634946	0.87[AFR][1000 genomes]
rs7642484	1.00[ASN][1000 genomes]
rs7652376	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145983800-145998800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:145984600-145990000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:145987000-145991800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:145987000-145992000	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links