Variant report

Variant	rs16858200
Chromosome Location	chr3:145990194-145990195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11916269	0.87[AFR][1000 genomes]
rs11919756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11920604	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11927463	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11928255	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11928534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11929382	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846498	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16858193	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35045356	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6780223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6780240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6788357	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6793309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72997087	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72997096	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72997098	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72999112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72999115	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72999117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72999118	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72999119	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72999121	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72999129	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72999131	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7623124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7634946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145983800-145998800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:145987000-145991800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:145987000-145992000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:145990000-145990200	Enhancers	H9 Cell Line	embryonic stem cell

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