Variant report

Variant	rs58315390
Chromosome Location	chr3:146067903-146067904
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10935625	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10935633	0.95[ASN][1000 genomes]
rs11915907	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11916260	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11916414	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11916417	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11917946	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11918216	0.84[ASN][1000 genomes]
rs11918410	0.84[ASN][1000 genomes]
rs11918865	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921657	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924097	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11924116	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924998	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11926182	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11926669	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927821	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11928697	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928822	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11929562	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12152259	0.95[ASN][1000 genomes]
rs12374006	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13061082	0.84[ASN][1000 genomes]
rs13067886	0.84[ASN][1000 genomes]
rs13071601	0.84[ASN][1000 genomes]
rs13082883	0.84[ASN][1000 genomes]
rs13083493	0.84[ASN][1000 genomes]
rs13086109	0.84[ASN][1000 genomes]
rs13096234	0.84[ASN][1000 genomes]
rs16858222	0.84[ASN][1000 genomes]
rs1849261	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2867866	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867872	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2903837	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34136928	0.84[ASN][1000 genomes]
rs34401766	0.84[ASN][1000 genomes]
rs34633594	0.84[ASN][1000 genomes]
rs35233557	0.84[ASN][1000 genomes]
rs35292452	0.84[ASN][1000 genomes]
rs35436411	0.84[ASN][1000 genomes]
rs35484079	0.84[ASN][1000 genomes]
rs35638338	0.83[ASN][1000 genomes]
rs35744782	0.84[ASN][1000 genomes]
rs35779013	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36097942	0.84[ASN][1000 genomes]
rs3765179	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3924718	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4089470	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4089471	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4308246	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4318525	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55978878	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56043733	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57028178	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57501572	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58016179	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58674795	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59122638	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59605619	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59892217	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59940298	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60356977	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60409976	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60885345	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61063526	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6440440	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6440444	0.95[ASN][1000 genomes]
rs66810063	0.84[ASN][1000 genomes]
rs6780315	0.84[ASN][1000 genomes]
rs6786556	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71300396	0.84[ASN][1000 genomes]
rs71300397	0.84[ASN][1000 genomes]
rs71300398	0.84[ASN][1000 genomes]
rs71300400	0.84[ASN][1000 genomes]
rs73865704	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73865706	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73865708	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73865710	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73865716	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73867560	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73867569	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73867575	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73868809	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73868810	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7432259	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7609910	0.84[ASN][1000 genomes]
rs7614407	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7621072	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7626996	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7646378	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7646493	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647333	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146063800-146068000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:146066200-146069000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:146067800-146068200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr3:146067800-146068400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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