Variant report

Variant	rs13086109
Chromosome Location	chr3:146002573-146002574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10935633	1.00[JPT][hapmap]
rs11914425	1.00[JPT][hapmap]
rs11916260	0.89[ASN][1000 genomes]
rs11916414	0.89[ASN][1000 genomes]
rs11916417	0.89[ASN][1000 genomes]
rs11918216	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918410	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918865	0.84[ASN][1000 genomes]
rs11921657	0.84[ASN][1000 genomes]
rs11924097	0.89[ASN][1000 genomes]
rs11924116	0.84[ASN][1000 genomes]
rs11924213	1.00[JPT][hapmap]
rs11924998	1.00[JPT][hapmap]
rs11926669	0.84[ASN][1000 genomes]
rs11928697	0.84[ASN][1000 genomes]
rs11928822	0.84[ASN][1000 genomes]
rs13061082	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062557	0.85[JPT][hapmap]
rs13067886	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071601	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075285	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13082883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082942	0.85[JPT][hapmap]
rs13083493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096234	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097291	0.85[JPT][hapmap]
rs16858222	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1849261	0.95[ASN][1000 genomes]
rs2175667	0.85[JPT][hapmap]
rs2867866	0.84[ASN][1000 genomes]
rs2867872	0.84[ASN][1000 genomes]
rs34136928	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34401766	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34633594	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35233557	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35292452	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35436411	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35484079	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35638338	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35744782	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36097942	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3765179	1.00[JPT][hapmap]
rs3804655	0.85[JPT][hapmap]
rs3804656	0.82[JPT][hapmap]
rs4089470	0.95[ASN][1000 genomes]
rs4089471	0.95[ASN][1000 genomes]
rs4308246	0.84[ASN][1000 genomes]
rs4318525	1.00[JPT][hapmap]
rs56043733	0.89[ASN][1000 genomes]
rs58315390	0.84[ASN][1000 genomes]
rs58674795	0.89[ASN][1000 genomes]
rs60356977	0.84[ASN][1000 genomes]
rs60409976	0.89[ASN][1000 genomes]
rs6440440	1.00[JPT][hapmap]
rs6440444	1.00[JPT][hapmap]
rs66810063	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780315	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806643	1.00[JPT][hapmap]
rs71300396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300397	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300398	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300400	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73867560	0.89[ASN][1000 genomes]
rs73867569	0.84[ASN][1000 genomes]
rs73867575	0.84[ASN][1000 genomes]
rs7609910	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621072	0.95[ASN][1000 genomes]
rs7626996	0.84[ASN][1000 genomes]
rs7646378	0.95[ASN][1000 genomes]
rs7646493	0.84[ASN][1000 genomes]
rs7647333	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146001000-146003000	Enhancers	Fetal Intestine Large	intestine
2	chr3:146001400-146002600	Enhancers	HepG2	liver
3	chr3:146001800-146003000	Enhancers	Fetal Intestine Small	intestine
4	chr3:146001800-146003800	Enhancers	Fetal Lung	lung
5	chr3:146002400-146002600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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