Variant report

Variant	rs6780315
Chromosome Location	chr3:146030663-146030664
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10935633	1.00[JPT][hapmap]
rs11914425	1.00[JPT][hapmap]
rs11916260	0.89[ASN][1000 genomes]
rs11916414	0.89[ASN][1000 genomes]
rs11916417	0.89[ASN][1000 genomes]
rs11918216	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918410	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918865	0.84[ASN][1000 genomes]
rs11921657	0.84[ASN][1000 genomes]
rs11924097	0.89[ASN][1000 genomes]
rs11924116	0.84[ASN][1000 genomes]
rs11924213	1.00[JPT][hapmap]
rs11924998	1.00[JPT][hapmap]
rs11926669	0.84[ASN][1000 genomes]
rs11928697	0.84[ASN][1000 genomes]
rs11928822	0.84[ASN][1000 genomes]
rs13061082	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062557	0.85[JPT][hapmap]
rs13067886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075285	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13082883	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082942	0.85[JPT][hapmap]
rs13083493	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086109	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096234	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097291	0.85[JPT][hapmap]
rs16858222	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1849261	0.95[ASN][1000 genomes]
rs2175667	0.85[JPT][hapmap]
rs2867866	0.84[ASN][1000 genomes]
rs2867872	0.84[ASN][1000 genomes]
rs34136928	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34401766	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34633594	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35233557	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35292452	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35436411	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35484079	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35638338	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35744782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36097942	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3765179	1.00[JPT][hapmap]
rs3804655	0.85[JPT][hapmap]
rs3804656	0.82[JPT][hapmap]
rs4089470	0.95[ASN][1000 genomes]
rs4089471	0.95[ASN][1000 genomes]
rs4308246	0.84[ASN][1000 genomes]
rs4318525	1.00[JPT][hapmap]
rs56043733	0.89[ASN][1000 genomes]
rs58315390	0.84[ASN][1000 genomes]
rs58674795	0.89[ASN][1000 genomes]
rs60102989	0.83[AFR][1000 genomes]
rs60356977	0.84[ASN][1000 genomes]
rs60409976	0.89[ASN][1000 genomes]
rs6440440	1.00[JPT][hapmap]
rs6440444	1.00[JPT][hapmap]
rs66810063	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806643	1.00[JPT][hapmap]
rs71300396	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300397	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73867529	0.83[AFR][1000 genomes]
rs73867530	0.83[AFR][1000 genomes]
rs73867558	0.83[AFR][1000 genomes]
rs73867559	0.83[AFR][1000 genomes]
rs73867560	0.89[ASN][1000 genomes]
rs73867569	0.84[ASN][1000 genomes]
rs73867575	0.84[ASN][1000 genomes]
rs7609910	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621072	0.95[ASN][1000 genomes]
rs7626996	0.84[ASN][1000 genomes]
rs7646378	0.95[ASN][1000 genomes]
rs7646493	0.84[ASN][1000 genomes]
rs7647333	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3410778	chr3:146017303-146060390	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146026600-146031200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:146026600-146031200	Weak transcription	NH-A	brain
3	chr3:146026600-146031400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:146026800-146031200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:146027000-146031000	Weak transcription	Osteobl	bone
6	chr3:146027000-146031200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:146027000-146031400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:146027000-146031400	Weak transcription	HSMMtube	muscle
9	chr3:146027200-146030800	Weak transcription	NHLF	lung
10	chr3:146027200-146031400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:146027200-146031600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:146027800-146031000	Weak transcription	Hela-S3	cervix
13	chr3:146028400-146030800	Weak transcription	HUVEC	blood vessel
14	chr3:146029000-146032800	Weak transcription	Liver	Liver
15	chr3:146029200-146031000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:146030400-146031400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:146030600-146031400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links