Variant report

Variant	rs13067886
Chromosome Location	chr3:146026957-146026958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:146017468..146019765-chr3:146026465..146028948,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10935633	1.00[JPT][hapmap]
rs11914425	1.00[JPT][hapmap]
rs11916260	0.89[ASN][1000 genomes]
rs11916414	0.89[ASN][1000 genomes]
rs11916417	0.89[ASN][1000 genomes]
rs11918216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918410	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918865	0.84[ASN][1000 genomes]
rs11921657	0.84[ASN][1000 genomes]
rs11924097	0.89[ASN][1000 genomes]
rs11924116	0.84[ASN][1000 genomes]
rs11924213	1.00[JPT][hapmap]
rs11924998	1.00[JPT][hapmap]
rs11926669	0.84[ASN][1000 genomes]
rs11928697	0.84[ASN][1000 genomes]
rs11928822	0.84[ASN][1000 genomes]
rs13061082	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062557	0.85[JPT][hapmap]
rs13071601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075285	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13082883	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082942	0.85[JPT][hapmap]
rs13083493	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086109	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096234	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097291	0.85[JPT][hapmap]
rs16858222	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1849261	0.95[ASN][1000 genomes]
rs2175667	0.85[JPT][hapmap]
rs2867866	0.84[ASN][1000 genomes]
rs2867872	0.84[ASN][1000 genomes]
rs34136928	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34401766	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34633594	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35233557	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35292452	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35436411	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35484079	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35638338	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35744782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36097942	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3765179	1.00[JPT][hapmap]
rs3804655	0.85[JPT][hapmap]
rs3804656	0.82[JPT][hapmap]
rs4089470	0.95[ASN][1000 genomes]
rs4089471	0.95[ASN][1000 genomes]
rs4308246	0.84[ASN][1000 genomes]
rs4318525	1.00[JPT][hapmap]
rs56043733	0.89[ASN][1000 genomes]
rs58315390	0.84[ASN][1000 genomes]
rs58674795	0.89[ASN][1000 genomes]
rs60356977	0.84[ASN][1000 genomes]
rs60409976	0.89[ASN][1000 genomes]
rs6440440	1.00[JPT][hapmap]
rs6440444	1.00[JPT][hapmap]
rs66810063	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806643	1.00[JPT][hapmap]
rs71300396	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300397	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71300400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73867560	0.89[ASN][1000 genomes]
rs73867569	0.84[ASN][1000 genomes]
rs73867575	0.84[ASN][1000 genomes]
rs7609910	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621072	0.95[ASN][1000 genomes]
rs7626996	0.84[ASN][1000 genomes]
rs7646378	0.95[ASN][1000 genomes]
rs7646493	0.84[ASN][1000 genomes]
rs7647333	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3410778	chr3:146017303-146060390	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146024000-146028000	Enhancers	Fetal Lung	lung
2	chr3:146025200-146027000	Enhancers	Fetal Intestine Small	intestine
3	chr3:146025600-146027000	Enhancers	Adipose Nuclei	Adipose
4	chr3:146025800-146027000	Enhancers	HSMM	muscle
5	chr3:146026000-146027000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:146026000-146027000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:146026000-146027000	Enhancers	HMEC	breast
8	chr3:146026000-146027000	Enhancers	NHEK	skin
9	chr3:146026200-146027000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:146026200-146027000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:146026200-146027000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:146026200-146027000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:146026200-146027000	Enhancers	A549	lung
14	chr3:146026200-146027000	Enhancers	HSMMtube	muscle
15	chr3:146026200-146027200	Enhancers	NHLF	lung
16	chr3:146026200-146027800	Enhancers	NHDF-Ad	bronchial
17	chr3:146026400-146027000	Enhancers	Right Atrium	heart
18	chr3:146026400-146027000	Enhancers	Small Intestine	intestine
19	chr3:146026400-146027200	Enhancers	Fetal Stomach	stomach
20	chr3:146026400-146028800	Weak transcription	Liver	Liver
21	chr3:146026600-146027000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:146026600-146027000	Enhancers	Osteobl	bone
23	chr3:146026600-146027200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:146026600-146027200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:146026600-146027200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:146026600-146027400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:146026600-146031200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:146026600-146031200	Weak transcription	NH-A	brain
29	chr3:146026600-146031400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:146026800-146027000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:146026800-146027000	Flanking Active TSS	HUVEC	blood vessel
32	chr3:146026800-146027800	Enhancers	Hela-S3	cervix
33	chr3:146026800-146031200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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