Variant report

Variant	rs572816073
Chromosome Location	chr6:142703005-142703006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:142701833..142703764-chr6:142704857..142706958,3	MCF-7	breast:
2	chr6:142697707..142700330-chr6:142702224..142704168,2	MCF-7	breast:
3	chr6:142615209..142616975-chr6:142701989..142704328,2	MCF-7	breast:
4	chr6:142702058..142703651-chr6:142704530..142706199,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv970353	chr6:142702492-142705790	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142697000-142703200	Weak transcription	NHDF-Ad	bronchial
2	chr6:142698600-142706200	Weak transcription	NHLF	lung
3	chr6:142698600-142733200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:142698800-142707600	Weak transcription	Placenta	Placenta
5	chr6:142698800-142707800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:142699600-142708000	Weak transcription	Pancreas	Pancrea
7	chr6:142699600-142709200	Weak transcription	Fetal Intestine Large	intestine
8	chr6:142699800-142705400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:142699800-142708000	Weak transcription	Liver	Liver
10	chr6:142699800-142709000	Weak transcription	Fetal Intestine Small	intestine
11	chr6:142699800-142718600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:142699800-142719200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:142700000-142705600	Weak transcription	NHEK	skin
14	chr6:142700000-142705800	Weak transcription	NH-A	brain
15	chr6:142700000-142706000	Weak transcription	HSMMtube	muscle
16	chr6:142700000-142714200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:142700200-142705200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:142700400-142705600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:142700400-142709000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:142700400-142709000	Weak transcription	Fetal Lung	lung
21	chr6:142700600-142705800	Weak transcription	Hela-S3	cervix
22	chr6:142701400-142703400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:142702000-142703600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:142702200-142704400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:142702200-142707800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:142702600-142706000	Strong transcription	HepG2	liver
27	chr6:142702800-142703200	Enhancers	HSMM	muscle
28	chr6:142702800-142703400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr6:142702800-142705000	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr6:142702800-142705800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:142703000-142703200	Genic enhancers	HUVEC	blood vessel
32	chr6:142703000-142703400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:142703000-142703400	Genic enhancers	A549	lung
34	chr6:142703000-142703600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:142703000-142703600	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links