Variant report

Variant	rs57287824
Chromosome Location	chr15:43491110-43491111
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43489220..43491207-chr15:43498126..43500672,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166947	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1863601	1.00[ASN][1000 genomes]
rs2271964	1.00[ASN][1000 genomes]
rs61268760	0.89[AFR][1000 genomes]
rs7162971	1.00[ASN][1000 genomes]
rs7183024	0.87[AFR][1000 genomes]
rs8035881	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43478600-43496200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:43478800-43494000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:43480400-43491200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:43480400-43491400	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:43480800-43491400	Strong transcription	Duodenum Mucosa	Duodenum
6	chr15:43482800-43496400	Weak transcription	A549	lung
7	chr15:43485000-43496400	Weak transcription	Stomach Mucosa	stomach
8	chr15:43485200-43496400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:43485400-43492400	Weak transcription	HepG2	liver
10	chr15:43485400-43493400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:43486000-43492000	Weak transcription	NHLF	lung
12	chr15:43487200-43491200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:43487200-43491400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr15:43487200-43491400	Weak transcription	Fetal Lung	lung
15	chr15:43487200-43492600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr15:43487400-43491200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:43487400-43491600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:43487400-43491800	Weak transcription	Osteobl	bone
19	chr15:43487400-43496000	Weak transcription	HMEC	breast
20	chr15:43487400-43496800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:43487600-43496400	Weak transcription	HUVEC	blood vessel
22	chr15:43487800-43491600	Weak transcription	NH-A	brain
23	chr15:43488200-43491400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr15:43488200-43492200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:43488200-43493800	Weak transcription	NHDF-Ad	bronchial
26	chr15:43488200-43496200	Weak transcription	Hela-S3	cervix
27	chr15:43489400-43496200	Weak transcription	Left Ventricle	heart
28	chr15:43489600-43491200	Weak transcription	Brain Angular Gyrus	brain
29	chr15:43489600-43491200	Weak transcription	Ovary	ovary
30	chr15:43489600-43491400	Weak transcription	Fetal Muscle Leg	muscle
31	chr15:43489600-43491600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr15:43489600-43492400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr15:43489600-43493000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr15:43489600-43496000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr15:43489600-43496400	Weak transcription	Psoas Muscle	Psoas
36	chr15:43489800-43491200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:43489800-43491400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr15:43489800-43491400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr15:43489800-43491600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:43489800-43491800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr15:43489800-43492000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:43489800-43492000	Weak transcription	NHEK	skin
43	chr15:43489800-43492200	Weak transcription	Small Intestine	intestine
44	chr15:43489800-43492600	Weak transcription	Colon Smooth Muscle	Colon
45	chr15:43489800-43492600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr15:43489800-43492600	Weak transcription	HSMMtube	muscle
47	chr15:43489800-43494000	Weak transcription	Brain Substantia Nigra	brain
48	chr15:43489800-43496200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr15:43489800-43496200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:43489800-43496200	Weak transcription	Pancreas	Pancrea

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