Variant report

Variant	rs7183024
Chromosome Location	chr15:43468197-43468198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr15:43468153-43468466	HepG2	liver:	n/a	n/a
2	FOXA1	chr15:43468093-43468467	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43460200..43462280-chr15:43465251..43468225,2	K562	blood:

Variant related genes	Relation type
TMEM62	TF binding region
ENSG00000137842	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10048057	1.00[EUR][1000 genomes]
rs10083725	1.00[EUR][1000 genomes]
rs10152237	1.00[EUR][1000 genomes]
rs10220812	1.00[EUR][1000 genomes]
rs1042168	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10438267	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10467909	1.00[EUR][1000 genomes]
rs1078243	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11504654	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11504655	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324094	1.00[EUR][1000 genomes]
rs12324436	1.00[EUR][1000 genomes]
rs12324573	1.00[EUR][1000 genomes]
rs1474199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1520519	1.00[EUR][1000 genomes]
rs16957409	1.00[EUR][1000 genomes]
rs16957462	1.00[EUR][1000 genomes]
rs16957499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16957502	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16957507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863601	1.00[EUR][1000 genomes]
rs2004809	1.00[EUR][1000 genomes]
rs2271964	1.00[EUR][1000 genomes]
rs2271965	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28444219	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28539201	1.00[EUR][1000 genomes]
rs3177296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34222269	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35996841	1.00[AMR][1000 genomes]
rs4419035	1.00[EUR][1000 genomes]
rs505276	1.00[EUR][1000 genomes]
rs57287824	0.87[AFR][1000 genomes]
rs58059509	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59401274	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59900401	1.00[EUR][1000 genomes]
rs60435696	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60481556	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61268760	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61343376	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61711558	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7162620	1.00[EUR][1000 genomes]
rs7162971	1.00[EUR][1000 genomes]
rs7171797	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176183	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8030850	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035881	1.00[EUR][1000 genomes]
rs8039342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040960	1.00[EUR][1000 genomes]
rs8041312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806236	1.00[EUR][1000 genomes]
rs9806629	1.00[EUR][1000 genomes]
rs9972314	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9972367	1.00[EUR][1000 genomes]
rs999025	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv904136	chr15:43257475-43482127	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv904139	chr15:43268970-43482127	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv904144	chr15:43276345-43482127	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
8	esv1802035	chr15:43370916-43487742	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43427600-43475000	Weak transcription	Stomach Mucosa	stomach
2	chr15:43440800-43476800	Weak transcription	Fetal Brain Male	brain
3	chr15:43441800-43477200	Weak transcription	HSMMtube	muscle
4	chr15:43442000-43476800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:43444600-43477200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr15:43444800-43471600	Weak transcription	Primary T cells from cord blood	blood
7	chr15:43444800-43477000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:43444800-43477000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr15:43445000-43471600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:43446000-43476600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:43447600-43477600	Weak transcription	Small Intestine	intestine
12	chr15:43448000-43477400	Weak transcription	Ovary	ovary
13	chr15:43448200-43477200	Weak transcription	Brain Substantia Nigra	brain
14	chr15:43449600-43477000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:43460400-43468200	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:43460600-43468400	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr15:43461000-43475400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr15:43461200-43476600	Weak transcription	Fetal Thymus	thymus
19	chr15:43461200-43476800	Weak transcription	Gastric	stomach
20	chr15:43461200-43477000	Weak transcription	A549	lung
21	chr15:43461400-43476800	Weak transcription	Hela-S3	cervix
22	chr15:43461400-43477200	Weak transcription	Right Ventricle	heart
23	chr15:43461600-43477000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:43461600-43477000	Weak transcription	Spleen	Spleen
25	chr15:43461600-43477400	Weak transcription	NHLF	lung
26	chr15:43461800-43476800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:43462200-43473400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:43462400-43477200	Weak transcription	Brain Angular Gyrus	brain
29	chr15:43462600-43477000	Weak transcription	Fetal Heart	heart
30	chr15:43462600-43477200	Weak transcription	HMEC	breast
31	chr15:43463000-43477000	Weak transcription	HUVEC	blood vessel
32	chr15:43463000-43477200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:43463200-43471400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:43463200-43472600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr15:43463400-43477200	Weak transcription	Osteobl	bone
36	chr15:43463600-43476400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr15:43463600-43477000	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:43464600-43468200	Strong transcription	Liver	Liver
39	chr15:43464800-43468200	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr15:43465200-43468200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr15:43465200-43468200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr15:43465200-43468200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr15:43465200-43468400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:43465200-43468400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr15:43465400-43468200	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr15:43465600-43468200	Strong transcription	Rectal Smooth Muscle	rectum
47	chr15:43465800-43468200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:43466200-43468200	Strong transcription	Brain Anterior Caudate	brain
49	chr15:43466200-43468400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
50	chr15:43466200-43468400	Strong transcription	Thymus	Thymus

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