Variant report

Variant	rs59900401
Chromosome Location	chr15:43568794-43568795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:43475230..43478041-chr15:43568264..43571072,2	K562	blood:
2	chr15:43565402..43569124-chr15:43569756..43572834,3	K562	blood:
3	chr15:43529509..43532294-chr15:43567272..43569682,2	K562	blood:

Variant related genes	Relation type
ENSG00000166946	Chromatin interaction
ENSG00000104055	Chromatin interaction
ENSG00000261687	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10048057	1.00[EUR][1000 genomes]
rs10083725	1.00[EUR][1000 genomes]
rs10152237	1.00[EUR][1000 genomes]
rs10220812	1.00[EUR][1000 genomes]
rs1042168	1.00[EUR][1000 genomes]
rs10438267	1.00[EUR][1000 genomes]
rs10467909	1.00[EUR][1000 genomes]
rs1078243	1.00[EUR][1000 genomes]
rs11504654	1.00[EUR][1000 genomes]
rs11504655	1.00[EUR][1000 genomes]
rs12324094	1.00[EUR][1000 genomes]
rs12324436	1.00[EUR][1000 genomes]
rs12324573	1.00[EUR][1000 genomes]
rs1474199	1.00[EUR][1000 genomes]
rs1520519	1.00[EUR][1000 genomes]
rs16957409	1.00[EUR][1000 genomes]
rs16957462	1.00[EUR][1000 genomes]
rs16957499	1.00[EUR][1000 genomes]
rs16957502	1.00[EUR][1000 genomes]
rs16957507	1.00[EUR][1000 genomes]
rs16957739	1.00[EUR][1000 genomes]
rs1863601	1.00[EUR][1000 genomes]
rs2004809	1.00[EUR][1000 genomes]
rs2271964	1.00[EUR][1000 genomes]
rs2271965	1.00[EUR][1000 genomes]
rs28444219	1.00[EUR][1000 genomes]
rs28539201	1.00[EUR][1000 genomes]
rs3177296	1.00[EUR][1000 genomes]
rs34222269	1.00[EUR][1000 genomes]
rs4419035	1.00[EUR][1000 genomes]
rs505276	1.00[EUR][1000 genomes]
rs58059509	1.00[EUR][1000 genomes]
rs59401274	1.00[EUR][1000 genomes]
rs59550885	0.97[ASN][1000 genomes]
rs60154727	1.00[ASN][1000 genomes]
rs60435696	1.00[EUR][1000 genomes]
rs60481556	1.00[EUR][1000 genomes]
rs61268760	1.00[EUR][1000 genomes]
rs61343376	1.00[EUR][1000 genomes]
rs61711558	1.00[EUR][1000 genomes]
rs7162620	1.00[EUR][1000 genomes]
rs7162971	1.00[EUR][1000 genomes]
rs7171797	1.00[EUR][1000 genomes]
rs7176183	1.00[EUR][1000 genomes]
rs7182685	1.00[EUR][1000 genomes]
rs7183024	1.00[EUR][1000 genomes]
rs8030850	1.00[EUR][1000 genomes]
rs8035881	1.00[EUR][1000 genomes]
rs8039342	1.00[EUR][1000 genomes]
rs8040769	1.00[EUR][1000 genomes]
rs8040960	1.00[EUR][1000 genomes]
rs8041312	1.00[EUR][1000 genomes]
rs9806236	1.00[EUR][1000 genomes]
rs9806629	1.00[EUR][1000 genomes]
rs9972314	1.00[EUR][1000 genomes]
rs9972367	1.00[EUR][1000 genomes]
rs999025	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43565400-43568800	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr15:43565400-43570600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:43565400-43570800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr15:43565800-43569600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr15:43566200-43574600	Weak transcription	Gastric	stomach
6	chr15:43566600-43569200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr15:43566600-43570200	Weak transcription	Esophagus	oesophagus
8	chr15:43567800-43569000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:43568000-43568800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:43568000-43569000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:43568000-43569200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:43568200-43570200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr15:43568400-43568800	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr15:43568600-43568800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:43568600-43568800	Enhancers	Left Ventricle	heart

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