Variant report

Variant	rs57289782
Chromosome Location	chr12:106416306-106416307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11112832	1.00[AFR][1000 genomes]
rs12319449	1.00[AFR][1000 genomes]
rs61105044	1.00[AFR][1000 genomes]
rs73395270	1.00[AFR][1000 genomes]
rs73395279	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv871	chr12:106407516-106429806	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106413600-106416600	Weak transcription	Pancreas	Pancrea
2	chr12:106414600-106417000	Enhancers	Liver	Liver
3	chr12:106414800-106417000	Enhancers	Fetal Intestine Small	intestine
4	chr12:106415000-106417200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:106415200-106416800	Enhancers	Fetal Intestine Large	intestine
6	chr12:106415200-106417000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:106415200-106417000	Enhancers	Fetal Kidney	kidney
8	chr12:106415600-106421200	Weak transcription	HSMMtube	muscle
9	chr12:106415800-106417200	Enhancers	HepG2	liver
10	chr12:106415800-106417800	Enhancers	HUVEC	blood vessel
11	chr12:106415800-106420600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:106415800-106456400	Weak transcription	Aorta	Aorta
13	chr12:106416000-106416600	Weak transcription	Right Ventricle	heart
14	chr12:106416000-106417000	Flanking Active TSS	A549	lung
15	chr12:106416000-106424200	Weak transcription	Right Atrium	heart
16	chr12:106416200-106416800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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