Variant report

Variant	rs73395279
Chromosome Location	chr12:106435228-106435229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11112832	1.00[AFR][1000 genomes]
rs12319449	1.00[AFR][1000 genomes]
rs57289782	1.00[AFR][1000 genomes]
rs61105044	1.00[AFR][1000 genomes]
rs73395270	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106415800-106456400	Weak transcription	Aorta	Aorta
2	chr12:106421800-106436000	Weak transcription	Fetal Brain Male	brain
3	chr12:106427600-106438600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr12:106427600-106438600	Weak transcription	A549	lung
5	chr12:106431600-106438000	Strong transcription	HSMMtube	muscle
6	chr12:106433400-106440400	Weak transcription	Brain Hippocampus Middle	brain
7	chr12:106433400-106444400	Weak transcription	Right Ventricle	heart
8	chr12:106433800-106438600	Weak transcription	HSMM	muscle
9	chr12:106433800-106443400	Weak transcription	Gastric	stomach
10	chr12:106434600-106439400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:106434600-106445400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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