Variant report

Variant	rs57304003
Chromosome Location	chr17:66847825-66847826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1481	1.00[ASN][1000 genomes]
rs1550646	1.00[ASN][1000 genomes]
rs1978962	1.00[ASN][1000 genomes]
rs2083790	1.00[ASN][1000 genomes]
rs2363753	1.00[ASN][1000 genomes]
rs4968967	1.00[ASN][1000 genomes]
rs7216817	1.00[ASN][1000 genomes]
rs8078168	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66845600-66850600	Enhancers	Fetal Muscle Leg	muscle
2	chr17:66846000-66848000	Enhancers	Fetal Lung	lung
3	chr17:66846200-66851200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr17:66846400-66849400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr17:66846800-66849000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr17:66847000-66849000	Weak transcription	NHDF-Ad	bronchial
7	chr17:66847000-66849200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr17:66847200-66849200	Weak transcription	Adipose Nuclei	Adipose
9	chr17:66847600-66849600	Weak transcription	Ovary	ovary
10	chr17:66847800-66849200	Weak transcription	Fetal Stomach	stomach
11	chr17:66847800-66849400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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