Variant report

Variant	rs57310311
Chromosome Location	chr6:24582209-24582210
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24580668..24582664-chr6:24719148..24720850,2	K562	blood:
2	chr6:24581924..24583883-chr6:24690538..24692523,2	MCF-7	breast:
3	chr6:24580547..24584375-chr6:24665231..24668702,6	MCF-7	breast:
4	chr6:24581200..24583513-chr6:24694242..24695890,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112304	Chromatin interaction
ENSG00000111802	Chromatin interaction
ENSG00000112308	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2076315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59838651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
2	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
3	chr6:24535600-24583400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:24539200-24583200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:24548400-24583400	Weak transcription	A549	lung
6	chr6:24562400-24583400	Weak transcription	Right Atrium	heart
7	chr6:24564400-24583400	Weak transcription	Brain Angular Gyrus	brain
8	chr6:24564400-24583400	Weak transcription	Brain Anterior Caudate	brain
9	chr6:24570200-24583400	Weak transcription	Brain Germinal Matrix	brain
10	chr6:24570200-24583600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:24572200-24584200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:24573600-24584000	Weak transcription	Fetal Brain Female	brain
13	chr6:24575600-24583400	Weak transcription	Brain Substantia Nigra	brain
14	chr6:24575800-24583400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr6:24576800-24583600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:24581800-24583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:24581800-24586000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:24582000-24583000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:24582000-24583200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:24582000-24583200	Weak transcription	Fetal Heart	heart
21	chr6:24582000-24584000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:24582000-24584200	Weak transcription	Fetal Intestine Large	intestine
23	chr6:24582200-24583400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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