Variant report

Variant	rs573212874
Chromosome Location	chr6:28045347-28045348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:28044886-28045376	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr6:28045279-28045350	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28043259..28045673-chr6:28049244..28050877,2	K562	blood:
2	chr6:28044681..28046793-chr6:28367579..28369114,2	K562	blood:
3	chr6:28045344..28046935-chr6:28047195..28048919,2	K562	blood:
4	chr6:28044713..28049958-chr6:28107484..28111355,5	K562	blood:
5	chr6:27864591..27866445-chr6:28044322..28046847,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ZNF165	TF binding region
ENSG00000198315	Chromatin interaction
ENSG00000197279	Chromatin interaction
ENSG00000272009	Chromatin interaction
ENSG00000238610	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv33436	chr6:28044346-28049043	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28042600-28046600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:28043200-28047800	Weak transcription	Spleen	Spleen
3	chr6:28044400-28046200	Weak transcription	K562	blood
4	chr6:28045200-28047600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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