Variant report

Variant	rs573235099
Chromosome Location	chr11:71238085-71238086
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr11:71237870-71238122	H1-hESC	embryonic stem cell:	n/a	chr11:71238018-71238029 chr11:71237997-71238008
2	USF1	chr11:71237845-71238116	HepG2	liver:	n/a	chr11:71238018-71238029 chr11:71237997-71238008
3	MAX	chr11:71237932-71238137	HepG2	liver:	n/a	chr11:71237970-71237980 chr11:71237968-71237983 chr11:71237969-71237980 chr11:71237971-71237978 chr11:71237968-71237981 chr11:71237970-71237979
4	FOSL2	chr11:71237836-71238466	HepG2	liver:	n/a	chr11:71237880-71237887
5	FOXA1	chr11:71237941-71238236	T-47D	breast:	n/a	chr11:71238119-71238131
6	USF1	chr11:71237789-71238106	K562	blood:	n/a	chr11:71238018-71238029 chr11:71237997-71238008
7	USF2	chr11:71237942-71238104	Hela-S3	cervix:	n/a	chr11:71238018-71238029 chr11:71237997-71238008
8	FOXA1	chr11:71237857-71238360	HepG2	liver:	n/a	chr11:71238119-71238131
9	RXRA	chr11:71237928-71238354	HepG2	liver:	n/a	chr11:71238007-71238027
10	MYBL2	chr11:71237764-71238252	HepG2	liver:	n/a	n/a
11	FOXA2	chr11:71237941-71238263	HepG2	liver:	n/a	chr11:71238119-71238131
12	FOXA1	chr11:71237920-71238220	T-47D	breast:	n/a	chr11:71238119-71238131
13	MAX	chr11:71237725-71238410	HepG2	liver:	n/a	chr11:71237970-71237980 chr11:71237968-71237983 chr11:71237969-71237980 chr11:71237971-71237978 chr11:71237968-71237981 chr11:71237970-71237979
14	FOXA2	chr11:71237691-71238410	HepG2	liver:	n/a	chr11:71238119-71238131
15	HEY1	chr11:71237812-71240636	HepG2	liver:	n/a	n/a
16	EP300	chr11:71237963-71238240	HepG2	liver:	n/a	chr11:71238171-71238185 chr11:71238154-71238163
17	USF1	chr11:71237883-71238094	H1-hESC	embryonic stem cell:	n/a	chr11:71238018-71238029 chr11:71237997-71238008
18	USF1	chr11:71237853-71238136	HepG2	liver:	n/a	chr11:71238018-71238029 chr11:71237997-71238008
19	FOXA1	chr11:71237861-71238327	HepG2	liver:	n/a	chr11:71238119-71238131
20	USF2	chr11:71237892-71238164	HepG2	liver:	n/a	chr11:71238018-71238029 chr11:71237997-71238008
21	SP1	chr11:71237924-71238445	HepG2	liver:	n/a	chr11:71237982-71238003
22	FOXA1	chr11:71237814-71238443	HepG2	liver:	n/a	chr11:71238119-71238131
23	FOXA1	chr11:71237835-71238350	HepG2	liver:	n/a	chr11:71238119-71238131

Variant related genes	Relation type
KRTAP5-7	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv468632	chr11:71200320-71289089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv555402	chr11:71200320-71289089	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3372246	chr11:71223101-71435819	Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv897900	chr11:71234107-71276909	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
6	nsv897899	chr11:71234107-71277981	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	esv3363568	chr11:71237277-71275754	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	esv3425891	chr11:71237287-71275790	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	esv3528100	chr11:71237332-71275725	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	esv3528101	chr11:71237332-71275725	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	esv3432021	chr11:71237346-71275760	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71232800-71243600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:71232800-71245800	Weak transcription	Pancreas	Pancrea
3	chr11:71232800-71259800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:71236200-71239200	Enhancers	Liver	Liver
5	chr11:71237200-71238800	Enhancers	Fetal Intestine Large	intestine
6	chr11:71237400-71238200	Enhancers	Fetal Intestine Small	intestine
7	chr11:71238000-71238200	Flanking Active TSS	HepG2	liver

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