Variant report

Variant	rs57324946
Chromosome Location	chr3:157888143-157888144
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10936119	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12107974	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12108109	1.00[AMR][1000 genomes]
rs56991859	1.00[AMR][1000 genomes]
rs57741231	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61415371	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441180	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157846200-157893400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr3:157846200-157893600	Weak transcription	Aorta	Aorta
3	chr3:157846800-157894400	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:157848000-157888200	Weak transcription	Thymus	Thymus
5	chr3:157849400-157894400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:157854600-157911800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:157856200-157894400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:157856400-157892400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr3:157868200-157916200	Weak transcription	Primary B cells from cord blood	blood
10	chr3:157873200-157902000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:157874000-157889600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:157879200-157896000	Weak transcription	Pancreas	Pancrea
13	chr3:157884400-157894800	Weak transcription	Fetal Thymus	thymus
14	chr3:157885000-157889000	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:157885200-157889600	Weak transcription	Psoas Muscle	Psoas
16	chr3:157885400-157889000	Enhancers	Stomach Mucosa	stomach
17	chr3:157886000-157888600	Weak transcription	GM12878-XiMat	blood
18	chr3:157886000-157899200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:157886200-157890200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:157887000-157888200	Weak transcription	Dnd41	blood
21	chr3:157887000-157889000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:157887000-157890800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:157887000-157892400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:157887000-157893600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:157887000-157894200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr3:157887000-157894800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr3:157887000-157916400	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr3:157887200-157888400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:157887200-157889800	Weak transcription	NHEK	skin
30	chr3:157887200-157891800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr3:157887200-157902000	Weak transcription	NHDF-Ad	bronchial
32	chr3:157887200-157902600	Weak transcription	Gastric	stomach
33	chr3:157887400-157888200	Weak transcription	Primary T cells from cord blood	blood
34	chr3:157887600-157889000	Weak transcription	K562	blood
35	chr3:157887600-157894200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:157887800-157888600	Weak transcription	A549	lung
37	chr3:157887800-157892000	Weak transcription	Osteobl	bone

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