Variant report

Variant	rs57741231
Chromosome Location	chr3:157839613-157839614
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157826605..157829792-chr3:157838040..157843107,6	K562	blood:

Variant related genes	Relation type
ENSG00000174891	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10936119	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12107974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12108109	1.00[AMR][1000 genomes]
rs56991859	1.00[AMR][1000 genomes]
rs57324946	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61415371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441180	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157828600-157845800	Weak transcription	Spleen	Spleen
2	chr3:157828600-157847800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:157828600-157857000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:157828800-157840800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:157828800-157841200	Weak transcription	Left Ventricle	heart
6	chr3:157828800-157847600	Weak transcription	NH-A	brain
7	chr3:157828800-157851000	Weak transcription	Right Ventricle	heart
8	chr3:157829000-157840600	Weak transcription	Fetal Kidney	kidney
9	chr3:157829000-157840800	Weak transcription	Adipose Nuclei	Adipose
10	chr3:157829000-157841000	Weak transcription	Fetal Intestine Large	intestine
11	chr3:157829000-157841200	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:157829000-157841400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:157829000-157849400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:157829200-157840000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:157829200-157840600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:157829200-157840800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:157829200-157841200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr3:157829200-157841200	Weak transcription	Fetal Thymus	thymus
19	chr3:157829200-157841400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:157829200-157841800	Weak transcription	Brain Substantia Nigra	brain
21	chr3:157829200-157842000	Weak transcription	Psoas Muscle	Psoas
22	chr3:157829200-157845400	Weak transcription	HMEC	breast
23	chr3:157829200-157861400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr3:157829400-157840600	Weak transcription	Fetal Lung	lung
25	chr3:157829600-157840600	Weak transcription	Brain Anterior Caudate	brain
26	chr3:157829600-157840800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr3:157829600-157841400	Weak transcription	Primary B cells from cord blood	blood
28	chr3:157829800-157840800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr3:157830000-157840200	Weak transcription	Colon Smooth Muscle	Colon
30	chr3:157830000-157840600	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr3:157830000-157840600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:157830000-157840600	Weak transcription	Thymus	Thymus
33	chr3:157830000-157840800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr3:157830000-157841000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr3:157830000-157841200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr3:157830000-157841200	Weak transcription	Hela-S3	cervix
37	chr3:157830000-157841400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:157830000-157841400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr3:157830000-157843400	Weak transcription	Small Intestine	intestine
40	chr3:157830000-157866400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr3:157830200-157840600	Weak transcription	Primary T cells from cord blood	blood
42	chr3:157830200-157840800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr3:157830200-157841400	Weak transcription	HepG2	liver
44	chr3:157830200-157841600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr3:157830400-157845000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr3:157830600-157839800	Weak transcription	Dnd41	blood
47	chr3:157830600-157841200	Weak transcription	A549	lung
48	chr3:157831400-157840600	Weak transcription	Ovary	ovary
49	chr3:157831800-157841000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr3:157831800-157845800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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