Variant report

Variant	rs57327189
Chromosome Location	chr6:150500084-150500085
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150499104..150501184-chr6:150507779..150510819,3	K562	blood:
2	chr6:150491966..150494133-chr6:150498224..150500888,2	MCF-7	breast:

rs_ID	r²[population]
rs1009498	1.00[AMR][1000 genomes]
rs55650377	1.00[AMR][1000 genomes]
rs58085182	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58763378	1.00[AMR][1000 genomes]
rs59602990	1.00[AMR][1000 genomes]
rs73779974	1.00[AMR][1000 genomes]
rs73782244	1.00[AMR][1000 genomes]
rs877114	1.00[AMR][1000 genomes]
rs9478508	1.00[AMR][1000 genomes]
rs9885596	1.00[AMR][1000 genomes]
rs9885598	1.00[AMR][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150491400-150506400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:150491600-150501400	Weak transcription	HMEC	breast
3	chr6:150494400-150501000	Weak transcription	Fetal Brain Female	brain
4	chr6:150497000-150502000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:150497200-150502400	Enhancers	Left Ventricle	heart
6	chr6:150497800-150500800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:150497800-150511000	Weak transcription	NHEK	skin
8	chr6:150498400-150500200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:150498400-150501000	Weak transcription	Right Atrium	heart
10	chr6:150498600-150501400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:150498800-150501400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:150499400-150501400	Weak transcription	Esophagus	oesophagus
13	chr6:150499400-150501600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:150499600-150501400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:150499600-150501800	Weak transcription	Psoas Muscle	Psoas
16	chr6:150499600-150503600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:150499600-150504600	Weak transcription	Colonic Mucosa	Colon
18	chr6:150499600-150505200	Weak transcription	Right Ventricle	heart
19	chr6:150499600-150506000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:150499800-150500800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:150499800-150503400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr6:150500000-150502400	Enhancers	K562	blood
24	chr6:150500000-150508000	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links