Variant report

Variant	rs877114
Chromosome Location	chr6:150398932-150398933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150394796..150396864-chr6:150397633..150400539,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs3860813	1.00[AMR][1000 genomes]
rs55650377	1.00[AMR][1000 genomes]
rs56706316	1.00[AMR][1000 genomes]
rs56896927	1.00[AMR][1000 genomes]
rs57327189	1.00[AMR][1000 genomes]
rs57472228	1.00[AMR][1000 genomes]
rs58085182	1.00[AMR][1000 genomes]
rs58307895	1.00[AMR][1000 genomes]
rs58763378	1.00[AMR][1000 genomes]
rs58946697	1.00[AMR][1000 genomes]
rs59281875	1.00[AMR][1000 genomes]
rs59602990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59878448	1.00[AMR][1000 genomes]
rs60248818	1.00[AMR][1000 genomes]
rs60386924	1.00[AMR][1000 genomes]
rs60494754	1.00[AMR][1000 genomes]
rs60897658	1.00[AMR][1000 genomes]
rs61084626	1.00[AMR][1000 genomes]
rs61230059	1.00[AMR][1000 genomes]
rs73782244	1.00[AMR][1000 genomes]
rs7748726	1.00[AMR][1000 genomes]
rs9478508	1.00[AMR][1000 genomes]
rs9885596	1.00[AMR][1000 genomes]
rs9885598	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv886767	chr6:150335407-150400488	Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1026236	chr6:150360882-150408946	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150390800-150400800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:150391200-150410000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:150392400-150400600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:150393800-150400800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:150394000-150401800	Weak transcription	Stomach Mucosa	stomach
6	chr6:150396600-150400200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:150397600-150400200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:150397800-150400000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:150397800-150400000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:150397800-150400200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:150397800-150400200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:150397800-150400600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:150397800-150400800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:150398000-150400000	Weak transcription	HMEC	breast
15	chr6:150398000-150400600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:150398000-150400800	Weak transcription	Primary T cells from cord blood	blood
17	chr6:150398200-150400600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:150398200-150400800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr6:150398400-150400600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links