Variant report
| Variant | rs61230059 |
|---|---|
| Chromosome Location | chr6:150297131-150297132 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:150295506..150297191-chr6:150310699..150313123,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs3860813 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55650377 | 1.00[AMR][1000 genomes] |
| rs56706316 | 1.00[AMR][1000 genomes] |
| rs56896927 | 1.00[AMR][1000 genomes] |
| rs57472228 | 1.00[AMR][1000 genomes] |
| rs58307895 | 1.00[AMR][1000 genomes] |
| rs58763378 | 1.00[AMR][1000 genomes] |
| rs58946697 | 1.00[AMR][1000 genomes] |
| rs59281875 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59602990 | 1.00[AMR][1000 genomes] |
| rs59878448 | 1.00[AMR][1000 genomes] |
| rs60248818 | 1.00[AMR][1000 genomes] |
| rs60386924 | 1.00[AMR][1000 genomes] |
| rs60494754 | 1.00[AMR][1000 genomes] |
| rs60897658 | 1.00[AMR][1000 genomes] |
| rs61084626 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61285074 | 1.00[AMR][1000 genomes] |
| rs73612461 | 1.00[AMR][1000 genomes] |
| rs73612479 | 1.00[AMR][1000 genomes] |
| rs7748726 | 1.00[AMR][1000 genomes] |
| rs877114 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886764 | chr6:150114745-150393683 | Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv517022 | chr6:150145001-150426272 | Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| 3 | nsv970175 | chr6:150286661-150300237 | Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:150296800-150297200 | Weak transcription | Spleen | Spleen |
