Variant report

Variant	rs57330350
Chromosome Location	chr4:73887395-73887396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:73567390..73568214-chr4:73887132..73888040,2	MCF-7	breast:
2	chr4:73334578..73335429-chr4:73887271..73888070,2	MCF-7	breast:
3	chr4:73370688..73371401-chr4:73886947..73888225,5	MCF-7	breast:
4	chr4:73568100..73568664-chr4:73886922..73887484,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs16849102	0.91[ASN][1000 genomes]
rs16849106	0.94[ASN][1000 genomes]
rs16849108	0.94[ASN][1000 genomes]
rs16849146	0.97[ASN][1000 genomes]
rs16849150	0.97[ASN][1000 genomes]
rs16849151	0.97[ASN][1000 genomes]
rs2061574	0.94[ASN][1000 genomes]
rs2061575	0.94[ASN][1000 genomes]
rs2061576	0.97[ASN][1000 genomes]
rs2061577	0.94[ASN][1000 genomes]
rs2306057	0.97[ASN][1000 genomes]
rs2366716	0.91[ASN][1000 genomes]
rs28709646	0.93[ASN][1000 genomes]
rs3796680	0.87[ASN][1000 genomes]
rs4019514	0.91[ASN][1000 genomes]
rs4615148	0.83[ASN][1000 genomes]
rs4631009	0.93[ASN][1000 genomes]
rs4694589	0.87[ASN][1000 genomes]
rs56235322	0.95[ASN][1000 genomes]
rs56382488	0.95[ASN][1000 genomes]
rs61149200	0.97[ASN][1000 genomes]
rs61468561	0.91[ASN][1000 genomes]
rs6845845	0.93[ASN][1000 genomes]
rs6849701	0.93[ASN][1000 genomes]
rs6851670	0.94[ASN][1000 genomes]
rs72663032	0.81[ASN][1000 genomes]
rs72859248	0.91[ASN][1000 genomes]
rs72859249	0.91[ASN][1000 genomes]
rs7670286	0.91[ASN][1000 genomes]
rs7674847	0.91[ASN][1000 genomes]
rs7675007	0.93[ASN][1000 genomes]
rs7675027	0.93[ASN][1000 genomes]
rs7676278	0.91[ASN][1000 genomes]
rs7687433	0.91[ASN][1000 genomes]
rs7690799	0.91[ASN][1000 genomes]
rs7691344	0.91[ASN][1000 genomes]
rs7692749	0.91[ASN][1000 genomes]
rs7694505	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949371	chr4:73678470-74094500	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1005704	chr4:73708248-73907315	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv432611	chr4:73740665-74099265	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv523169	chr4:73752242-74120910	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv998707	chr4:73753922-74044843	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv537136	chr4:73753922-74044843	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv917017	chr4:73754127-74044830	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv1013174	chr4:73785324-74031884	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv537137	chr4:73785324-74031884	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv1012068	chr4:73817769-74003079	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv1014088	chr4:73817769-74031884	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv537138	chr4:73817769-74031884	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
13	nsv533502	chr4:73819067-74044813	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:73886800-73887400	Enhancers	Cortex derived primary cultured neurospheres	brain

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