Variant report

Variant	rs7694505
Chromosome Location	chr4:73913778-73913779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:73913250..73915803-chr4:73919597..73921645,2	K562	blood:
2	chr4:73904499..73907050-chr4:73912241..73913931,2	K562	blood:
3	chr4:73912246..73914460-chr4:73934481..73936074,2	K562	blood:

Variant related genes	Relation type
ENSG00000163626	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10028486	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs11933644	0.83[ASN][1000 genomes]
rs16849102	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16849106	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16849108	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16849146	1.00[ASN][1000 genomes]
rs16849150	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16849151	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16849172	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16849185	0.94[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2061574	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2061575	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2061576	0.94[ASN][1000 genomes]
rs2061577	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2306057	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2366716	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28373296	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28460851	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28709646	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28776801	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3796680	0.84[ASN][1000 genomes]
rs4019514	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4615148	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4631009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4694589	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56235322	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56382488	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57330350	0.97[ASN][1000 genomes]
rs61149200	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61468561	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61661011	0.83[ASN][1000 genomes]
rs67995155	0.89[EUR][1000 genomes]
rs6824334	1.00[ASW][hapmap];0.94[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs6845845	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6849701	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6851670	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72859248	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72859249	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72861861	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7661799	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7670286	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7674847	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7675007	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7675027	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7676278	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7679277	0.94[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.83[ASN][1000 genomes]
rs7687433	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7690799	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7691344	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7692425	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7692749	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949371	chr4:73678470-74094500	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv432611	chr4:73740665-74099265	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv523169	chr4:73752242-74120910	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv998707	chr4:73753922-74044843	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv537136	chr4:73753922-74044843	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv917017	chr4:73754127-74044830	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv1013174	chr4:73785324-74031884	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv537137	chr4:73785324-74031884	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv1012068	chr4:73817769-74003079	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv1014088	chr4:73817769-74031884	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv537138	chr4:73817769-74031884	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv533502	chr4:73819067-74044813	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:73910400-73919400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr4:73910800-73920400	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:73911000-73922600	Weak transcription	Spleen	Spleen
4	chr4:73911400-73924600	Weak transcription	Pancreas	Pancrea
5	chr4:73912600-73922000	Weak transcription	Aorta	Aorta
6	chr4:73913200-73918800	Weak transcription	Primary T cells from cord blood	blood

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