Variant report

Variant	rs67995155
Chromosome Location	chr4:73975668-73975669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:73932983..73934916-chr4:73974450..73977208,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10028486	0.82[EUR][1000 genomes]
rs16849102	0.82[EUR][1000 genomes]
rs16849106	0.82[EUR][1000 genomes]
rs16849108	0.82[EUR][1000 genomes]
rs16849150	0.83[EUR][1000 genomes]
rs16849151	0.83[EUR][1000 genomes]
rs16849172	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16849185	0.87[EUR][1000 genomes]
rs2061574	0.82[EUR][1000 genomes]
rs2061575	0.82[EUR][1000 genomes]
rs2061577	0.82[EUR][1000 genomes]
rs2366716	0.82[EUR][1000 genomes]
rs28373296	0.96[EUR][1000 genomes]
rs28460851	0.96[EUR][1000 genomes]
rs28776801	0.96[EUR][1000 genomes]
rs4019514	0.82[EUR][1000 genomes]
rs4631009	0.91[EUR][1000 genomes]
rs4694589	0.96[EUR][1000 genomes]
rs61149200	0.89[EUR][1000 genomes]
rs6845845	0.91[EUR][1000 genomes]
rs6849701	0.91[EUR][1000 genomes]
rs6851670	0.82[EUR][1000 genomes]
rs72859248	0.82[EUR][1000 genomes]
rs72859249	0.82[EUR][1000 genomes]
rs72861861	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7661799	0.96[EUR][1000 genomes]
rs7674847	0.82[EUR][1000 genomes]
rs7675007	0.82[EUR][1000 genomes]
rs7675027	0.81[EUR][1000 genomes]
rs7676278	0.82[EUR][1000 genomes]
rs7687433	0.82[EUR][1000 genomes]
rs7690799	0.81[EUR][1000 genomes]
rs7694505	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949371	chr4:73678470-74094500	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv432611	chr4:73740665-74099265	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv523169	chr4:73752242-74120910	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv998707	chr4:73753922-74044843	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv537136	chr4:73753922-74044843	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv917017	chr4:73754127-74044830	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv1013174	chr4:73785324-74031884	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv537137	chr4:73785324-74031884	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv1012068	chr4:73817769-74003079	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv1014088	chr4:73817769-74031884	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv537138	chr4:73817769-74031884	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv533502	chr4:73819067-74044813	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
13	esv1849323	chr4:73926670-74115116	Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
14	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:73936200-73980000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:73938800-74005200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:73939000-74005000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:73940400-74043400	Strong transcription	Fetal Thymus	thymus
5	chr4:73949200-73988200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:73950600-74004200	Strong transcription	HSMM	muscle
7	chr4:73952800-73992400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:73952800-74023000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:73954600-73992200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:73954600-73995400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:73955200-73991400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:73955200-73991600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:73955800-74019000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr4:73955800-74022400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr4:73956000-73995600	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr4:73957600-73985200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr4:73957800-73978800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr4:73957800-73984200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:73958400-73979200	Weak transcription	Hela-S3	cervix
20	chr4:73958600-73978800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr4:73959000-73976400	Strong transcription	Adipose Nuclei	Adipose
22	chr4:73959600-73977200	Strong transcription	NH-A	brain
23	chr4:73962800-73978800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr4:73962800-73980000	Strong transcription	Primary T cells from cord blood	blood
25	chr4:73964600-73985200	Weak transcription	Fetal Heart	heart
26	chr4:73966000-74005200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr4:73966000-74016800	Weak transcription	Psoas Muscle	Psoas
28	chr4:73966200-73989200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:73966600-73989800	Weak transcription	Colonic Mucosa	Colon
30	chr4:73967000-73980600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr4:73967200-73984200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr4:73968000-73978800	Weak transcription	NHEK	skin
33	chr4:73968000-73981000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:73968000-73983600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr4:73968000-73983800	Weak transcription	Pancreas	Pancrea
36	chr4:73968000-73984400	Weak transcription	Spleen	Spleen
37	chr4:73968000-74005200	Weak transcription	Esophagus	oesophagus
38	chr4:73969200-73978200	Strong transcription	Fetal Muscle Leg	muscle
39	chr4:73969200-74030200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr4:73969400-73978000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr4:73969600-73994000	Strong transcription	Osteobl	bone
42	chr4:73969600-74020000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr4:73969800-73976000	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr4:73969800-73976600	Strong transcription	Primary B cells from peripheral blood	blood
45	chr4:73969800-73978800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr4:73969800-73992800	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr4:73970200-73992400	Strong transcription	Fetal Intestine Large	intestine
48	chr4:73970200-74005000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:73970200-74005200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:73970200-74005200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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