Variant report

Variant	rs61661011
Chromosome Location	chr4:74098860-74098861
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74094714..74099476-chr4:74109744..74111749,4	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10028486	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11933644	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16849102	0.83[ASN][1000 genomes]
rs16849106	0.85[ASN][1000 genomes]
rs16849108	0.85[ASN][1000 genomes]
rs16849146	0.83[ASN][1000 genomes]
rs16849150	0.83[ASN][1000 genomes]
rs16849151	0.83[ASN][1000 genomes]
rs2061574	0.85[ASN][1000 genomes]
rs2061575	0.85[ASN][1000 genomes]
rs2061576	0.82[ASN][1000 genomes]
rs2061577	0.85[ASN][1000 genomes]
rs2306057	0.83[ASN][1000 genomes]
rs2366716	0.83[ASN][1000 genomes]
rs28709646	0.87[ASN][1000 genomes]
rs3796680	0.81[ASN][1000 genomes]
rs4019514	0.83[ASN][1000 genomes]
rs4631009	0.87[ASN][1000 genomes]
rs4694589	0.81[ASN][1000 genomes]
rs56235322	0.84[ASN][1000 genomes]
rs56382488	0.84[ASN][1000 genomes]
rs61149200	0.83[ASN][1000 genomes]
rs61468561	0.83[ASN][1000 genomes]
rs6824334	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6845845	0.87[ASN][1000 genomes]
rs6849701	0.87[ASN][1000 genomes]
rs6851670	0.85[ASN][1000 genomes]
rs72663032	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72859248	0.83[ASN][1000 genomes]
rs72859249	0.83[ASN][1000 genomes]
rs72861861	0.81[ASN][1000 genomes]
rs7661799	0.81[ASN][1000 genomes]
rs7670286	0.83[ASN][1000 genomes]
rs7674847	0.83[ASN][1000 genomes]
rs7675007	0.84[ASN][1000 genomes]
rs7675027	0.84[ASN][1000 genomes]
rs7676278	0.83[ASN][1000 genomes]
rs7679277	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7687433	0.83[ASN][1000 genomes]
rs7690799	0.83[ASN][1000 genomes]
rs7691344	0.83[ASN][1000 genomes]
rs7692425	0.87[ASN][1000 genomes]
rs7692749	0.83[ASN][1000 genomes]
rs7694505	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432611	chr4:73740665-74099265	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv523169	chr4:73752242-74120910	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv1849323	chr4:73926670-74115116	Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv879486	chr4:74031423-74114322	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	esv1793600	chr4:74046221-74116012	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv879488	chr4:74050725-74099754	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
8	nsv879489	chr4:74050725-74115116	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
9	esv3410570	chr4:74055180-74122498	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74056000-74123000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:74059600-74123000	Weak transcription	Esophagus	oesophagus
3	chr4:74078200-74123000	Weak transcription	Lung	lung
4	chr4:74087600-74116400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:74087800-74123400	Weak transcription	Gastric	stomach
6	chr4:74088800-74099200	Weak transcription	Placenta	Placenta
7	chr4:74088800-74100200	Weak transcription	Left Ventricle	heart
8	chr4:74088800-74111000	Weak transcription	Colonic Mucosa	Colon
9	chr4:74089000-74100200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:74089000-74121400	Weak transcription	Hela-S3	cervix
11	chr4:74089200-74099200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr4:74089200-74099200	Weak transcription	Fetal Intestine Large	intestine
13	chr4:74089200-74099400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr4:74089200-74100000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr4:74089200-74100200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:74089200-74100200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr4:74089200-74100200	Weak transcription	Fetal Brain Male	brain
18	chr4:74089200-74100200	Weak transcription	Ovary	ovary
19	chr4:74089200-74100200	Weak transcription	HSMMtube	muscle
20	chr4:74089200-74100200	Weak transcription	NH-A	brain
21	chr4:74089200-74100400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:74089200-74100400	Weak transcription	HMEC	breast
23	chr4:74089200-74108800	Weak transcription	Right Ventricle	heart
24	chr4:74089200-74109400	Weak transcription	Fetal Brain Female	brain
25	chr4:74089200-74111000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr4:74089200-74111600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr4:74089200-74117600	Weak transcription	NHDF-Ad	bronchial
28	chr4:74089200-74122000	Weak transcription	Aorta	Aorta
29	chr4:74089400-74099400	Weak transcription	Adipose Nuclei	Adipose
30	chr4:74089400-74100000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr4:74089400-74100200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr4:74089400-74100600	Weak transcription	Fetal Kidney	kidney
33	chr4:74089400-74121800	Weak transcription	NHLF	lung
34	chr4:74089600-74099400	Weak transcription	HUVEC	blood vessel
35	chr4:74089600-74099600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr4:74089600-74100200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr4:74089600-74111800	Weak transcription	Fetal Heart	heart
38	chr4:74089800-74112000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr4:74090000-74099200	Weak transcription	Liver	Liver
40	chr4:74090000-74100200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr4:74090000-74100200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr4:74090000-74100200	Weak transcription	Spleen	Spleen
43	chr4:74090000-74100200	Weak transcription	NHEK	skin
44	chr4:74090200-74100800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr4:74090800-74100200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr4:74091000-74099200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr4:74091000-74102000	Weak transcription	Brain Substantia Nigra	brain
48	chr4:74091000-74111000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr4:74091200-74103000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr4:74091200-74107800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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